barSeed - Barley Seed Development Database

Probe CUST_11942_PI390587928

Source Contig U35_36846

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11942_PI390587928	Hv_44K_v2	TCTTCTAGACCAGAACCATGTCGCCAAAATAGGCAGCTACAATATCCCAATCCTAGGAGA	484	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15202.2	2413	2e-24	466 - 525	100	60 / 60	plus	ABC02665
MLOC	MLOC_15202.1	3258	2e-24	1621 - 1680	100	60 / 60	plus	ABC02665
JLOC1	JLOC1_10417.1	3389	8e-25	1621 - 1680	100	60 / 60	plus
Harvest21	ABC40903	467	3e-25	130 - 189	100	60 / 60	plus
Harvest21	ABC32256	679	3e-25	485 - 544	100	60 / 60	plus
Harvest35	U35_43806	467	3e-25	130 - 189	100	60 / 60	plus
Harvest35	U35_36846	679	3e-25	485 - 544	100	60 / 60	plus

Contig Sequence (679 bp)

>U35_36846 679 Hv_44K_v2
GCTCCACTAAATTTTCTTGAGTCTGTTCACAATTGGGCAAAGGTGATGCCTGCAATTAAC
CTTAAATTGTTCTAGTTATTATGCCCATGACCATGAGTTCATTATATCAGATGTATCTGG
GGAAGCTAAGCAATGGTGCCGCAGTGACAATCAGGAGCCTCAAGGTGAAGAGGAACCAGA
GCTCCCAAAGCTTCAACCGCCACATCGAAACGATATCTAGGCTCAGGCATCGGCACTTGG
TCAGCGCTCTAGGGCACTGCTTTGAATACGATCTCGACGACTCCACCGTAACCCAACTCT
ACCTCGTGTTCGAGTACGTGCAAAATGGGAACCTGAGGAGCAGGATTTCGCAAGGAACTG
AAGGGCGGAAGCTTACCTGGGGGCAGAGGATATCGGCCGCCATCGGTGTCGCCAAGGGCA
TCCAGTTCTTGCATGGAGGGATCATACCCGGTCTATTCGGGAACAATTTGAGGATCAGCA
ACATTCTTCTAGACCAGAACCATGTCGCCAAAATAGGCAGCTACAATATCCCAATCCTAG
GAGAGGCTGAAAACCCTGAGGGAGGGGCTGGAAGCAGACACCAAACTGATAGCACGATGC
TCAGCGACAAGATCGACATATTCGATTCCGGAGTGATCCTGCTCGAGCTTGTGTCTGGGA
AGCCGATCACATCGATATA

Homology of Contig U35_36846 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g57780.1	840	5e-100	protein\|protein kinase, putative, expressed
Brachypodium v1_2	Bradi1g06100.1	799	2e-113
Arabidopsis v10	AT3G03770.1	802	7e-65	Leucine-rich repeat protein kinase family protein \| chr3:945303-948436 REVERSE LENGTH=802