barSeed - Barley Seed Development Database

Probe CUST_11937_PI390587928

Source Contig U35_48820

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11937_PI390587928	Hv_44K_v2	TGGTCTGTTATATCATGTTGTGCCTTGGATTTGGAAGAGGAGACAAAAGAAGAAAATGAA	47	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68318.1	1674	2e-24	25 - 84	100	60 / 60	minus	ABC04009 ABC04010
JLOC1	JLOC1_45193.2	1733	8e-25	1594 - 1653	100	60 / 60	plus
JLOC1	JLOC1_45193.1	1901	8e-25	1762 - 1821	100	60 / 60	plus
Harvest21	ABC04009	1535	3e-25	1446 - 1505	100	60 / 60	plus	ABC04009
Harvest35	U35_48820	557	3e-25	48 - 107	100	60 / 60	minus
Harvest35	U35_1359	1552	3e-25	1463 - 1522	100	60 / 60	plus

Contig Sequence (557 bp)

>U35_48820 557 Hv_44K_v2
TTTTTTTTTTTTTTTTTAATCACCAAAATGCAATTCTTTTATTCAATTTCATTTTCTTCT
TTTGTCTCCTCTTCCAAATCCAAGGCACAACATGATATAACAGACCAATGTACTGCACTA
TCACACTTCTATTTCTTCATGACAACTTTGTAGTCCGGAGTACCGAAAGCACGGCACACA
ATCATCCATGCTTCAGCAACTTTCTATCCTCAAGCTACTACCATCGCTCTCACAAATTCA
TGTTGAACTACACGAACAGCCTAGTTTTGGATAGGGCCAGTGACAGACCACTCCAGTTCG
AACTCACTACACCCCATTCAGAAATCAAGAAAATGTTTATGTAGACAAAGTAGGGCTGTC
AACCGCAAGCGCCATCGTGTTGAGTCCATTGTCGACATAAACAGTTGAACCAGTGATTGC
AGATGCCAATGGAGACACCAAGAATGCTGCTGCGTTCCCCACTTCCTCTGCCAAGAGTTC
CTTCTGCAATGGTGCGTTAACATAAGAGTACTCGATCATCTTCTCGATGAATCCAATAGC
TTTTGCAGCTCTGCTCC

Homology of Contig U35_48820 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None