- Probe CUST_11924_PI390587928
- Source Contig U35_48826
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11924_PI390587928 | Hv_44K_v2 | GAAGCTTCATATTTTTAAGCACTGATGGCTGGGTCTTGGAAGAGCAAACTTACTGCGTTT | 69 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.525 | 1.981 | 1.168 | 0.843 | 0.459 | 0.475 |
| Raw | 710.465 | 1428.082 | 742.815 | 821.652 | 158.756 | 179.735 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK376176 | 1636 | 2e-24 | 1520 - 1579 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_70849.2 | 718 | 2e-24 | 485 - 544 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_70849.1 | 886 | 2e-24 | 766 - 825 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_47034.1 | 933 | 8e-25 | 691 - 750 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_48826 | 523 | 3e-25 | 70 - 129 | 100 | 60 / 60 | minus |
Contig Sequence (523 bp)
>U35_48826 523 Hv_44K_v2 TTTTTTTTTTTTTTTTTAAGGACATATGACAGGTCTTCATTTGATATCCGGTCAGTTTCT TTACAAAAAAAACGCAGTAAGTTTGCTCTTCCAAGACCCAGCCATCAGTGCTTAAAAATA TGAAGCTTCTGCTCCCAATTTCTTTTCAACTACTCCGTATCATGTTAACGGTAACCAAGA CATCTCACCTGATGCCTGAACTAAATATACGATAAACTAAACCACGTCAGTATGCTACCT ACTCATCTGCAGTAGCAGCCAGCCACTCTAACCCTGGAATGGCAGCATAGCTATCTAGAT TCAGATACAAAGCATAAGACAACAGATCGTTGGGAGATTGTCGTCCCAGCAATGGATATA CTGCGATGATAAGTCAGGACTATATCCAGATTTAACCATCTTTGGTCGATTTCTTGTCAG ACTTGTCTCTCTGAACGCTGGCATCAGAAGATTTCTTTCTCTCTGGAGAAACTGGTTCTT CCTCTTCTTTGACAGGACGCGGGGAATCTTCAGCAGCCGGGTC
Homology of Contig U35_48826 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |