- Probe CUST_11920_PI390587928
- Source Contig U35_24870
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_11920_PI390587928 | Hv_44K_v2 | TGCGGCTTCGTCGGCAACACGGCGGCGCTCCTCTGCCACTTCGTCAGCGCGCACGACTGG | 331 | GeneList: saddlebrown MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.197 | 0.213 | 0.822 | 2.297 | 1.680 | 1.647 |
Raw | 45.064 | 73.952 | 253.326 | 1081.910 | 292.968 | 308.972 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_73112.1 | 1230 | 2e-24 | 466 - 525 | 100 | 60 / 60 | plus | None |
JLOC1 | JLOC1_48657.1 | 1219 | 8e-25 | 410 - 469 | 100 | 60 / 60 | plus | |
Harvest21 | ABC23173 | 414 | 3e-25 | 332 - 391 | 100 | 60 / 60 | plus | |
Harvest35 | U35_24870 | 391 | 3e-25 | 332 - 391 | 100 | 60 / 60 | plus |
Contig Sequence (391 bp)
>U35_24870 391 Hv_44K_v2 AAAAAAGGTAATCATGGCGCCCCCGTGGGTTCCCAGCGTCGCGGCCATCGCTAACTCGTC GGCGGAGGACATGGAGGAGCCCCTCGACTGCGGCATCTGCTTCCTCCCACTCCACGCGCC GCCAGTCTTCATGTGCGAAGCTGGGCACCTGATCTGCTCGCCCTGCCGCGGAATGCTCGG GCTGGCCGTGGGGATGTGCCACGTCTGCAGTGCCAAGGCCGCCCGCCCCGGCTCTCGGCG GGACGACGGCCGCGACGTCTGGCCGGTCTACTACGCGCCCCGCGACCGCATCGGCGCGCT CCGCGGGCCGTGCCGCTGCCCGGACAACGCCTGCGGCTTCGTCGGCAACACGGCGGCGCT CCTCTGCCACTTCGTCAGCGCGCACGACTGG
Homology of Contig U35_24870 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |