barSeed - Barley Seed Development Database

Probe CUST_11919_PI390587928

Source Contig U35_48829

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11919_PI390587928	Hv_44K_v2	CTCTTTTACGTGTACATCGATCGATTTTATTACGTTCCATGATGGATTCACGCCAAAAAA	11	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.682	2.584	2.345	1.153	0.400	0.338
Raw	33.953	84.862	63.292	48.083	5.072	4.523

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC06734	1778	8e-21	1705 - 1767	95	60 / 63	plus	ABC06734
Harvest35	U35_48829	373	3e-25	12 - 71	100	60 / 60	minus
Harvest35	U35_16451	1873	8e-21	1800 - 1862	95	60 / 63	plus

Contig Sequence (373 bp)

>U35_48829 373 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGCGTGAATCCATCATGGAACGTAATAAAATCGATCGATGTAC
ACGTAAAAGAGGAAGAAAACTTGAGCAATCTACCAAAGCAACCAAAAGGCAGGGAGGGTA
CAAGAATAATGACACCATGTACCAATGTACAAATATGAATCAGAGCGTCCAGCTAATTAG
GCTTAGCGACATCAGTCACTCCTGTTCCGTATCCTATACCGCAAAAGAATATATTTTTTT
AACAGAGATCCTCAAATTTCGCCGCCCTTCATGGACGGACGCGACGCAATGTAGGATGAT
GGGTGACGGATGGGTCAGTCGTCGTCGTCCTCGTAGTAGCGCTTGAACTCGAAGGCGGCG
ACGGCCATGATCC

Homology of Contig U35_48829 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None