barSeed - Barley Seed Development Database

Probe CUST_11914_PI390587928

Source Contig U35_24876

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11914_PI390587928	Hv_44K_v2	AACACTTGTGGCCACTTTATCTAGCCAGGGTAGGGACGCGATTCTTGGCGTGAACCCGCA	306	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2259.1	3573	2e-24	106 - 165	100	60 / 60	plus	ABC09788
MLOC	MLOC_2258.3	1824	2e-24	553 - 612	100	60 / 60	plus	None
MLOC	MLOC_2258.2	2328	2e-24	364 - 423	100	60 / 60	plus	ABC09788
MLOC	MLOC_2258.1	1253	2e-24	364 - 423	100	60 / 60	plus	None
JLOC1	JLOC1_1356.1	2581	8e-25	2370 - 2429	100	60 / 60	minus
JLOC1	JLOC1_1354.2	1935	8e-25	339 - 398	100	60 / 60	plus
JLOC1	JLOC1_1354.1	1700	8e-25	339 - 398	100	60 / 60	plus
Harvest21	ABC22705	427	3e-25	307 - 366	100	60 / 60	plus
Harvest35	U35_24876	429	3e-25	307 - 366	100	60 / 60	plus

Contig Sequence (429 bp)

>U35_24876 429 Hv_44K_v2
CTCTCTCTCCTCCCCCTGCCGCCGCCGCCGCCGGCGGCGCGAGTCTAGAAGAGAGGCCGA
AAGCCGGCGCCTGCACCGCCGCCGCTGCGCCCCACCGCGCCCGGCCTCCAAGCAGCTCCA
TTCTTCACCTTCTCGCGCGCGCCTCCGCCGCATCTCTGGACCGCTGCTTCCTCCCCGCCC
CAAGCCTATGGACATGTCCGGCCCCAGATGGAAGAAGGGCAAAGACGGCAAGAATTTCTC
AGCTCTGGCAGCAGCTCAACCCATGTCAGGCATTGTTGCTAAGCTCCAGTCTTCACTGAA
AGGCGCAACACTTGTGGCCACTTTATCTAGCCAGGGTAGGGACGCGATTCTTGGCGTGAA
CCCGCAGCAAGCTACACTTCTGAACCGTGCCGCCTTCGGCCGGGCTCTGGACAATGCTGG
AGCAGAGAA

Homology of Contig U35_24876 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None