- Probe CUST_11911_PI390587928
- Source Contig U35_24879
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11911_PI390587928 | Hv_44K_v2 | TGGACAATGTAACTATTGGTCGGTTATCAGTGAAGTGCACCATGGTGGCATTCCCTCAAA | 339 | GeneList: thistle1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 26.955 | 11.021 | 0.791 | 0.411 | 0.942 | 0.839 |
| Raw | 199.853 | 130.196 | 7.314 | 3.154 | 2.778 | 2.977 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC24465 | 413 | 3e-25 | 340 - 399 | 100 | 60 / 60 | plus | ABC24465 |
| Harvest35 | U35_24879 | 413 | 3e-25 | 340 - 399 | 100 | 60 / 60 | plus |
Contig Sequence (413 bp)
>U35_24879 413 Hv_44K_v2 GCACGAGGAGAGAGAATTATGTATGGGAATTTGAGAGAGTTTGTGGGAATTAAACAAGAG GTTAAATAAGAGATGACTATAATGGTCAGGCTCTTTACAAGCCGAGTGATATAGTATGGA GGTTATTGAAGAGTTCTCGGGGTGGCAACAATGGTGGGATCAACCTGCCGCCTAGCTATA CCCACATTCAAAGTTGACCTATGATATTGGCATGATGGAATTTATGAATTGTCACCAGGA AGCAAATGGGACAACACGCAAGATAGCCAGGAATACTTTTATCCAATGTATCAGGTGTAA ATGGTGATGATCCTCCTAGCTTTGTTTTGAATGCTCATGTGGACAATGTAACTATTGGTC GGTTATCAGTGAAGTGCACCATGGTGGCATTCCCTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_24879 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |