barSeed - Barley Seed Development Database

Probe CUST_11909_PI390587928

Source Contig U35_36852

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11909_PI390587928	Hv_44K_v2	TACCTAACTAATGAACTTCAAGTCAGTGACATAACATATAATTCTGGGTTGAGTGTGGAT	521	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364743	4030	2e-24	2497 - 2556	100	60 / 60	plus	ABC32264
MLOC	MLOC_16571.3	2313	2e-24	2205 - 2264	100	60 / 60	plus	ABC32264
MLOC	MLOC_16571.2	2225	2e-24	2020 - 2079	100	60 / 60	plus	ABC32264
MLOC	MLOC_16571.4	603	2e-24	391 - 450	100	60 / 60	plus	ABC32264
MLOC	MLOC_16571.1	2360	2e-24	2147 - 2206	100	60 / 60	plus	ABC32264
JLOC1	JLOC1_11416.1	2237	8e-25	2024 - 2083	100	60 / 60	plus
Harvest21	ABC32264	589	3e-25	522 - 581	100	60 / 60	plus	ABC32264
Harvest35	U35_36852	589	3e-25	522 - 581	100	60 / 60	plus

Contig Sequence (589 bp)

>U35_36852 589 Hv_44K_v2
TTTTTTTTTTTTTTTTTATTCAGAAACAGAGGTTTATTATTTCCAAGTTGCAATAGTACC
GGCCACACATGATGACGTATGGCACTTTTATTTTGTAGCTCTTCATCGATCAACTAAACG
GTGATCGATCTAGCTAGCACATCACAGATCTTAGCAGACACCACCGGCACAGGTAGCTGC
CATGGGGATGCTGTAGATGGTGGGGGTGATGGTGGTGCACGGGGTGGTGGTGCAATATTG
CGGAATGTTCACGCTGCACATCGACGGAAGGGTCTGAAGCACCATCCTTATTATCTCAAC
CGGAACCTGCTGCTGAGGCTGGCCGAAACTTTGGTGAGGAGAACTGCATCAATGGGCCAC
AAAAAGTAGAAGCCAACGAATGGTTTCATGAGATGGCCCCGATGGCACACCGACTCCTTT
CAGCTTTAATCATAGAAGATAATTTTTCTGGCTCCAGTGATGTGCAAAGAGACATGCTTG
TCGACATTTCAGATAGCCATATTCCCTGCACTGCCAACAGATACCTAACTAATGAACTTC
AAGTCAGTGACATAACATATAATTCTGGGTTGAGTGTGGATTTTACACA

Homology of Contig U35_36852 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None