barSeed - Barley Seed Development Database

Probe CUST_11908_PI390587928

Source Contig U35_36859

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11908_PI390587928	Hv_44K_v2	AACTTGAAGAAGCAAACCTGGAACTCGCGAAACTGACAAACAAGGTGAGCTTGCTACAAG	445	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.790	1.726	1.902	1.201	0.459	0.432
Raw	110.062	358.161	353.322	348.039	46.860	48.566

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5253.2	3741	2e-24	2954 - 3013	100	60 / 60	plus	None
MLOC	MLOC_5253.1	3544	2e-24	2728 - 2787	100	60 / 60	plus	None
JLOC1	JLOC1_3373.2	3528	8e-25	2635 - 2694	100	60 / 60	plus
JLOC1	JLOC1_3373.1	3565	8e-25	2672 - 2731	100	60 / 60	plus
Harvest21	ABC32286	618	3e-25	446 - 505	100	60 / 60	plus
Harvest35	U35_36859	618	3e-25	446 - 505	100	60 / 60	plus

Contig Sequence (618 bp)

>U35_36859 618 Hv_44K_v2
GGGCAACTAAGAGGAATTATTAAAACATTGGAGAGTGAGGTGCAGAAGGGGAAGATGTCT
CACAAAGAGCTCGTGGCACAACTAGAGGCTATGAAGACTGAATCAGAGAGAACACTTTCG
GTGGAGTCCGCCAAAGAATCATTAGAGGCTCAGCTCCTGGTAGCAAACTCAGAAATCGCA
AAGCTGCACGTAACGGTGAATGCACTGGAGTCTGATGCAGCAAAGGAGAGAGAATATTCT
TCGGAGGTCAAGATGCAATTGGAGGCAGTTGAGGGCATCAGAAAGGTTTTGGGGTCTGAG
CTTGAGTCTGCGCACCAGGAGACCATGAAGCTCCAGGAGAAGGTGTCGTCACTGGAAGTG
AGGCTGAAAGAGCAGAGTGTGTTGCTGGTAGAATTCACTGCCAAGGCAGAGGATGCAGTG
TCAGGGAGAAAGGCAATGGGGAGTCAACTTGAAGAAGCAAACCTGGAACTCGCGAAACTG
ACAAACAAGGTGAGCTTGCTACAAGGGAAGATTGAGCAGGAGAAGCTGCTCTCAGAAGAG
TATGAAGCGAAATGCCGCANACTGGAGGCTCAGCTGTCAAGGGATAGTCGGGAGGCAAAA
CTTTGGCGACTCGCCAAC

Homology of Contig U35_36859 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g06910.3	822	1e-96	protein\|myosin heavy chain-related, putative, expressed
Brachypodium v1_2	Bradi4g24310.1	880	9e-99
Arabidopsis v10	None