barSeed - Barley Seed Development Database

Probe CUST_11907_PI390587928

Source Contig U35_48830

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11907_PI390587928	Hv_44K_v2	TACTTCCGCAACCTGTTGAGCCGCTTCGGCCTCCTCCACTCGGACCAGGAGCTCTTCAAC	230	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357812	1529	7e-23	900 - 959	98	59 / 60	plus	ABC12191
MLOC	MLOC_78725.2	1682	7e-23	555 - 614	98	59 / 60	minus	ABC12191
MLOC	MLOC_78725.1	2754	7e-23	801 - 860	98	59 / 60	minus	ABC12191
JLOC1	JLOC1_52466.2	1880	4e-23	1139 - 1198	98	59 / 60	plus
JLOC1	JLOC1_52466.1	2630	4e-23	1889 - 1948	98	59 / 60	plus
Harvest21	ABC12190	585	1e-23	271 - 330	98	59 / 60	plus
Harvest35	U35_48830	493	3e-25	231 - 290	100	60 / 60	minus
Harvest35	U35_16248	1599	1e-23	895 - 954	98	59 / 60	plus

Contig Sequence (493 bp)

>U35_48830 493 Hv_44K_v2
TTTTTTTTTTTTTTTTTGACATGAATAAAGTGTCGTCTCTTATTCATTTCTTTCCTTGCA
AAACAATCATCGTTGGGGCCACGTACTTACAAGACTTATATCTGAAACTATAATCATCAT
CATATGGTACAGATAAAGAATCCGCGCAGTTTACCAAAGCAATGCCGACGCCGTGATGTG
TCGCCGCCGTCGCCGGCGTACTGCTGCGCGATGGAGTCGACGGGCCCGCCGTTGAAGAGC
TCCTGGTCCGAGTGGAGGAGGCCGAAGCGGCTCAACAGGTTGCGGAAGTAGCCGTTGTCG
AAGCGCACAGAGCTGAAGGCGTCCAGCGGAGCCAGGTTGCCGTCGCCCACGCCGCCCTGC
GCCGGGCACACCTGCCGCCGCCGCGTCGCGAACCCGGCGTTGATGTTGCTGTCGTTGTAC
ACGCGCGACCGGAAGCTCGCGCACCGCGCCGCGCCGATCGTGTGCGCGCCCGACAGCGCC
ACCATGTCGCGGG

Homology of Contig U35_48830 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g14160.1	322	5e-56	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi3g09080.1	323	3e-57
Arabidopsis v10	None