- Probe CUST_11906_PI390587928
- Source Contig U35_48831
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11906_PI390587928 | Hv_44K_v2 | AGGCGAGCTTGTCCTACTGCATTCCTTTTTGCTCAAATCATATTTTAATTCTGTAATTCT | 51 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.574 | 1.519 | 1.077 | 0.886 | 0.366 | 0.350 |
| Raw | 2614.847 | 3910.337 | 2433.027 | 3183.090 | 459.631 | 479.233 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_69140.1 | 2103 | 3e-21 | 1952 - 2008 | 98 | 56 / 57 | plus | ABC00275 ABC00309 ABC00398 ABC00501 ABC00925 ABC01000 ABC34629 ABC37572 ABC37604 ABC37614 ABC47640 |
| JLOC1 | JLOC1_45803.2 | 1855 | 2e-21 | 1682 - 1738 | 98 | 56 / 57 | plus | |
| JLOC1 | JLOC1_45803.1 | 2127 | 2e-21 | 1954 - 2010 | 98 | 56 / 57 | plus | |
| Harvest35 | U35_48831 | 463 | 3e-25 | 52 - 111 | 100 | 60 / 60 | minus |
Contig Sequence (463 bp)
>U35_48831 463 Hv_44K_v2 TTTTTTTTTTTTTTTTTCAAGCAAAACTTGCATCTATTAGGAGTAGTAACAAGAATTACA GAATTAAAATATGATTTGAGCAAAAAGGAATGCAGTAGGACAAGCTCGCCTTAAATAAAA AAAATGCTTATTTATAAGTTGGGACAGATTTTCTCCAAACAGTACGCTCATTGGGGCAGA CGCAGCAAACCACCTAAAGCTAATAGTTTATTCAAAGTAGCAATAGCCTGGCCGGCTGCT TCACAGTAACCAAAACGACAAACGGAAGTCAGAACGAATTCCACAGACGGAACAGCGACA GCAAAAATCATCTTATCACTCGCACAGCACCGCGCCCTCCTCCAAAAAATCCTCCTCCGC CCGCCATGCGAGCAGGTTGGCAAGCTTGCCTTCCTTGACCAGAGGGGGGCCGCTCTCCAC ATTCTCGCCCTCAAAGCAGTGGAAGACGGACCTGGGCGACCCG
Homology of Contig U35_48831 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |