- Probe CUST_11902_PI390587928
- Source Contig U35_48836
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11902_PI390587928 | Hv_44K_v2 | TGTCCGCGCGCGCGTGGTGTGTTGTGTTTCGTGAAATAAAATGTTTTTGCGGCCAAAAAA | 11 | GeneList: plum1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.293 | 0.278 | 0.434 | 1.850 | 2.157 | 2.420 |
| Raw | 377.609 | 564.544 | 815.704 | 5115.300 | 2155.570 | 2635.070 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_48836 | 116 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (116 bp)
>U35_48836 116 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGCCGCAAAAACATTTTATTTCACGAAACACAACACACCACGC GCGCGCGGACACCCTGCTTCAATCCAAGCACGGGCAAAAACTGAATGGTTAACAAC
Homology of Contig U35_48836 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |