barSeed - Barley Seed Development Database

Probe CUST_11900_PI390587928

Source Contig U35_24880

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11900_PI390587928	Hv_44K_v2	CATGTGATGTGGAATGACTTTCTATATATACTTAAGCCGCGTTTGGATTGAGTGTAAAAT	713	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.870	2.501	1.323	0.875	0.353	0.552
Raw	100.562	203.479	98.101	98.067	14.409	24.166

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373688	3935	2e-24	3851 - 3910	100	60 / 60	plus	None
MLOC	MLOC_11307.1	947	2e-24	767 - 826	100	60 / 60	plus	None
JLOC1	JLOC1_7482.4	3185	8e-25	3003 - 3062	100	60 / 60	plus
JLOC1	JLOC1_7482.3	3209	8e-25	3027 - 3086	100	60 / 60	plus
JLOC1	JLOC1_7482.2	3469	8e-25	3287 - 3346	100	60 / 60	plus
JLOC1	JLOC1_7482.1	3473	8e-25	3291 - 3350	100	60 / 60	plus
Harvest35	U35_24880	836	3e-25	714 - 773	100	60 / 60	plus

Contig Sequence (836 bp)

>U35_24880 836 Hv_44K_v2
GGTGAAGGCCAGTCGACAAGCCAGCAGGACGGAACGAAATCTGATTTTATTCCAAGGGCA
TCCTTCGGCCTTCCACATTGGCTTGAGGTTCAACCATCCATCGGCCTCATCGAGCCTGGA
GAAACAATGGAAGTTAACGTGCATCACGAGAACTACTACACGCAAGAAGAATTCGTCGAT
GGAGTCGTGCAAGGCGGATGGTGCGAACTGACCAGAGACAAGGATGCCGTCCTGCTGGTC
AATGTGACAGGCAGCACCTCAACCGAAACCGTTACGCACAGGATCAACGTCCGGCACTGC
TGCGCCGCAAGCCCGGCGCCCCGGCCGGCCAGTCTACTGTCCATCGCCGCCCCGCCGCCC
GGTGACGCTCCGTCTAGCGAAGGCCCCACGGAACGTTCTTCCAGAAAGAGCCAGTCGAAC
CATCTGCAGCGTTCGGACGCGCATTTCGGCGCCTCAGAGGTGCATGACCTGTGCCGTCTG
CGGGACATGTAAGGGCTTTTCTCTTGTTTGATTGATGTAGTAGCAGTTTTGTATAGGGGG
CGAGGTAATAGTGTGCTTACCAACAAGAATCAGGGAGGAGCTGCTCCACTGTTAACGCTG
TACATATGCAGCCTCTCACCATTCTTCGTGTAACCAAGGAAGAATTGCATAGTTACAGGA
CATAATCTGTAGTTAGTTTTTTTTTTAACTTTTTTTTGGTGTGTGGAGGAGTGCATGTGA
TGTGGAATGACTTTCTATATATACTTAAGCCGCGTTTGGATTGAGTGTAAAATAATACAA
TACAAGTGTATTAATTTTACAAATGTAATTTATAGGGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_24880 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g41270.2	1011	1e-57	protein\|endonuclease/exonuclease/phosphatase family domain containing protein, expressed
Brachypodium v1_2	Bradi3g40800.1	1110	1e-66
Arabidopsis v10	None