barSeed - Barley Seed Development Database

Probe CUST_118_PI415269222

Source Contig TA46063_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_118_PI415269222	Hv_44K_v2	AACGAGTATGACGCCCTAAGTGCATTTTGAGTTCTGCAACCAAGATCATCTTTTCAAATC	611	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	14.766	8.968	1.496	0.572	0.289	0.290
Raw	401.881	396.870	57.039	38.100	5.488	5.434

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_52528.1	972	4e-23	729 - 788	98	59 / 60	plus
Harvest21	ABC14539	974	3e-25	765 - 824	100	60 / 60	plus	ABC14539
Harvest35	U35_6008	974	1e-23	765 - 824	98	59 / 60	plus

Contig Sequence (671 bp)

>TA46063_4513 671 Hv_44K_v2
GGCGTGTCGGAGCCGTTCATGGAGGCGCTGCTGGACGGGTACGAGGGCGGGTTCGAGGGC
GTGGGCACGCTCGTCGACGTCGGCGGCAGCTCCGGCGCCTGCCTCGAGATGATCATGCGC
CGGGTGCCCACCATCCGCGAAGGCGTCAACTTCGACCTGCCAGACGTCGTCGCCGCCGCG
CCCCCCATCGCCGGAGTGAAGCACGTTGGTGGAGACATGTTCAAGTCCATCCCCTCCGGC
GACGCCATCTTCATGAAGTGGGTTCTCACGACGTGGACCAACGACGAGTGCACGGCGATC
CTCAAGAAATGCCACGACGCGCTGCCGGACGGCGGGAAGCTCGTCGCGTGCGAGCCGGTG
GTGCCGGAGACGACGGACGCCAGCACGAGGACGAGGGCGCTGCTGGAGAACGACATCTTC
GTCATGACCACCTACCGGACCCAGGGGAGGGAGCGCTCCGAGGAGGAGTTCCGGCAGCTC
GGCATCGCCGCCGGCTTCGCCGGCTTCAGGGCACTCTACCTCGACCCTTTCTATGCTCTT
CTCGAGTATGTCAAGTGATCCGTGGCTCTGGCCCAATTGCTTCTCCCGTACCCTACGTGT
AACAGAAACTGAACGAGTATGACGCCCTAAGTGCATTTTGAGTTCTGCAACCAAGATCAT
CTTTTCAAATC

Homology of Contig TA46063_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g57760.1	366	4e-114	protein\|O-methyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g55890.1	363	3e-117
Arabidopsis v10	AT3G53140.1	359	5e-86	O-methyltransferase family protein \| chr3:19695692-19697355 FORWARD LENGTH=359