barSeed - Barley Seed Development Database

Probe CUST_1189_PI390587928

Source Contig U35_21116

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1189_PI390587928	Hv_44K_v2	AAGAAGAACAACATCGTGGGCGATGAGGTTTGCAGCGCGGTGACGACGGACGATTCTTCC	34	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353571	2181	2e-24	753 - 812	100	60 / 60	plus	ABC18280
MLOC	MLOC_14129.1	1228	2e-24	1014 - 1073	100	60 / 60	plus	None
MLOC	MLOC_14129.2	816	2e-24	567 - 626	100	60 / 60	plus	None
JLOC1	JLOC1_9630.1	1208	8e-25	965 - 1024	100	60 / 60	plus
Harvest21	ABC17551	493	8e-21	1 - 52	100	52 / 52	plus
Harvest35	U35_21116	535	3e-25	35 - 94	100	60 / 60	plus

Contig Sequence (535 bp)

>U35_21116 535 Hv_44K_v2
TGTGAAGCAGCAGCACGACAACGACAAGAACAAGAAGAAGAACAACATCGTGGGCGATGA
GGTTTGCAGCGCGGTGACGACGGACGATTCTTCCGCTGCGGTCGGGTCCGAGAACAGCAA
GTCGTCGGCGTCGGCAGAGGGCCACAGCAAGAGGACGTCGGCAGCCGCAGCGACCAAGAG
CTCCCACGGCAGGCGGAAGGTGAAGGTGGACTGGACGCCGGAGTTGCACCGGCGGTTCGT
GCAGGCGGTGGAGCAGCTGGGGCTGGACAAGGCGGTGCCGTCGCGGATCCTGGAGCTCAT
GGGCAACGAGTACCGTCTCACGCGCCACAACATCGCCAGCCATCTCCAGAAGTACCGGTC
ACACAGGAAGCACCTGATGGCGAGGGAGGCGGAGGCGGCGAGCTGGACGCACAAGCGGCA
GATGTACGCGGCGGCCGGCGGGCCGAGGAAGGACGCGCCCCGCGGGAGGCGGCCCGTGGG
TCGTGCCGACGGTCGGGTTCCCGCCTCCGGGGACGATGCCGCACCCGCACGCGGC

Homology of Contig U35_21116 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g13740.1	540	4e-53	protein\|myb-like DNA-binding domain containing protein, expressed
Brachypodium v1_2	Bradi2g08287.1	550	1e-58
Arabidopsis v10	None