barSeed - Barley Seed Development Database

Probe CUST_11893_PI390587928

Source Contig U35_24888

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11893_PI390587928	Hv_44K_v2	TTCCAACAGCACGGGCAAGACAGGGAACAATGGGGAAGGGCTGAATGGATCTGCCTCCAT	138	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51513.4	2106	2e-24	1943 - 2002	100	60 / 60	minus	ABC12809
MLOC	MLOC_51513.3	2284	2e-24	1967 - 2026	100	60 / 60	minus	ABC12809
MLOC	MLOC_51513.2	3072	2e-24	2783 - 2842	100	60 / 60	minus	ABC12809
MLOC	MLOC_51513.1	3887	2e-24	3131 - 3190	100	60 / 60	minus	ABC12809
JLOC1	JLOC1_32916.2	2353	8e-25	259 - 318	100	60 / 60	plus
JLOC1	JLOC1_32916.1	2791	8e-25	697 - 756	100	60 / 60	plus
Harvest21	ABC24161	534	3e-25	139 - 198	100	60 / 60	plus
Harvest35	U35_24888	534	3e-25	139 - 198	100	60 / 60	plus

Contig Sequence (534 bp)

>U35_24888 534 Hv_44K_v2
CATACTGGCCGGAATCACGCCGCGCGGCTGACCGTGGGGGCACGCTTGGACACTCCGCCG
CATCGGATGAGGTTGAGCATCATATAGTAGCGTCACCACAATGCTGGAAAACGGCACACA
GCTGACACCGGCCTCCACTTCCAACAGCACGGGCAAGACAGGGAACAATGGGGAAGGGCT
GAATGGATCTGCCTCCATGGAGGAGGAGAAGCGCCAAGGCAACGGCGGCGACGCGCAGCC
GCCGCCGAGCACCTGCACGACGTGCGCCAAGGGACACACGTGCCAGGCAGTGGTCAGCCG
GACGCGGGAGATGCGGGGCCTCATCGACGCCAAGAAGCCTCACCAGGCGCAGGACCTCTT
CGGTCACCTCGCCGACGAGGGCCACCGCCCGTCCTTGGTGACTTACACCACCCTGCTCAC
CGCGGTGACGAACCAGCGCGCCTTCGAGGCGATCCCTTCGCTGCTCGCCGGCATGGACGC
CGCCGGGCTGCGGCCGGACGCCATCTTCTTCAACGCCCTCATCAACTCCTTCGT

Homology of Contig U35_24888 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None