- Probe CUST_11891_PI390587928
- Source Contig U35_36864
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11891_PI390587928 | Hv_44K_v2 | GGTGTACACGTGTGATGTTTTGGTGTTTATATGTATGTGTATACGTATGTATTTCTGTGA | 342 | GeneList: midnightblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.094 | 0.404 | 0.787 | 1.500 | 2.149 | 2.950 |
| Raw | 39.741 | 272.216 | 438.600 | 1256.004 | 653.711 | 990.985 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_63532.1 | 1658 | 2e-24 | 28 - 87 | 100 | 60 / 60 | minus | ABC32291 |
| JLOC1 | JLOC1_41623.1 | 1216 | 8e-25 | 872 - 931 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32291 | 472 | 3e-25 | 343 - 402 | 100 | 60 / 60 | plus | ABC32291 |
| Harvest35 | U35_36864 | 472 | 3e-25 | 343 - 402 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_17303 | 1486 | 3e-25 | 135 - 194 | 100 | 60 / 60 | plus |
Contig Sequence (472 bp)
>U35_36864 472 Hv_44K_v2 GTCCAGGCGGTGCAGAGGCTGCGGGACGAGCGGAGGGGCATGGAGGAGGAGCTGCAGGCC ATGGACCGCAGGCTCCGCGCGGCGGAGAACCGGCCGGGCCAGATGATGGCGTTCCTCGGC AAGCTCGCGGACGACCCGGGCGTGGTGCTGCGCGCCATGGTCGCCAAGAAGGAGGAGCTG GCTGCAGCCGGTGCCGGCGGCATGGATCCAAGACCAGATAAGAGGAGGCGGATCGGGGCC GAGGCCGAGGAGGCAGCACAGAGCAGGGCCGTGCCGTTCCCCTTCTCTAACGCGGGACAC GTGTTCTACTAATAGACCTTGAGAGTGGAGAGTAGATAGATAGGTGTACACGTGTGATGT TTTGGTGTTTATATGTATGTGTATACGTATGTATTTCTGTGAAAAACAACAAAACTGTCC CTTTTCAAANAAAAAAAAAAAAAANAAACCCNACCAAAAAAAAAAAAAAAAA
Homology of Contig U35_36864 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |