barSeed - Barley Seed Development Database

Probe CUST_11888_PI390587928

Source Contig U35_36868

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11888_PI390587928	Hv_44K_v2	AGTTAAAAACTCCATTGACTCTGTGACACCATGATAGGGTGGAGGAAAAGCTGAATATCA	569	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.408	0.522	0.858	1.343	1.407	1.792
Raw	3.213	8.278	15.038	37.777	12.973	18.122

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC32301	661	3e-25	570 - 629	100	60 / 60	plus
Harvest35	U35_36868	661	3e-25	570 - 629	100	60 / 60	plus

Contig Sequence (661 bp)

>U35_36868 661 Hv_44K_v2
GCTTGTAGGAGGTGCATGATAGAGAAATGGAGGTTCATGATGCTATGGGATATTCAGAGG
ACCAGATAACTGAATTGAAGAAGGAGATCCACAGAACTCGGGATGAACAGCTTGCAAACA
TTACTGCCATGGTAACAGATTCTATTTTATCTCTAAATAAATCTCACATTTAGTTCTGTT
ACTTTCAATTAAAATTGTGTTCCAGAAACTTATCCCCTTCTCTATATGGCATATTATCTA
CATATGTTCCACTACATATATTTTCTAATGATGCTATATTAGTTGACAGTACTTTTAATG
AAGTTATATTTGTAAAATATATCTATGATACTTCCCTTTTACAAAAAAAAATAGAAAAGG
AGGTTGAAACCTGCATTGCACACGGCCCATGCTTCCCTTTCTACATAAGTTGATAACTTT
ACAAAACAGTTTTTTTGTTGTTGGAAAAAAAGTACTAGGACTTATCTTCACTTCTGTTTA
CACATCCAGCTTTTTTTGGACATTTTAGAGATTGTTTTAAATCCCCAGAATTATCTAAAT
ATCTGCCTATTTACATGTATGGGTTTCCAAGTTAAAAACTCCATTGACTCTGTGACACCA
TGATAGGGTGGAGGAAAAGCTGAATATCACGGGTGGAGAAGCTGCAAGTTCAGCTCATGG
A

Homology of Contig U35_36868 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None