barSeed - Barley Seed Development Database

Probe CUST_11887_PI390587928

Source Contig U35_36869

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11887_PI390587928	Hv_44K_v2	CGCGTACGACATCCCGGGCATCGCCAGAGTGTACGGCCGGCGCCCGCTCCTCGTGCTCCG	256	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360630	2392	2e-24	260 - 319	100	60 / 60	plus	ABC16379
MLOC	MLOC_54672.1	1891	7e-23	1741 - 1800	98	59 / 60	plus	ABC14708 ABC17119 ABC35045
MLOC	MLOC_54671.2	2149	7e-23	424 - 483	98	59 / 60	plus	None
MLOC	MLOC_54671.4	2006	7e-23	159 - 218	98	59 / 60	plus	None
MLOC	MLOC_54671.3	1983	7e-23	389 - 448	98	59 / 60	plus	None
MLOC	MLOC_54671.5	1264	7e-23	5 - 64	98	59 / 60	plus	None
MLOC	MLOC_54671.1	2789	7e-23	781 - 840	98	59 / 60	plus	ABC14708 ABC16379
JLOC1	JLOC1_35194.7	2269	4e-23	43 - 102	98	59 / 60	plus
JLOC1	JLOC1_35194.6	2262	4e-23	100 - 159	98	59 / 60	plus
JLOC1	JLOC1_35194.5	2319	4e-23	100 - 159	98	59 / 60	plus
JLOC1	JLOC1_35194.4	1655	4e-23	107 - 166	98	59 / 60	plus
JLOC1	JLOC1_35194.3	1654	4e-23	126 - 185	98	59 / 60	plus
JLOC1	JLOC1_35194.2	2335	4e-23	129 - 188	98	59 / 60	plus
JLOC1	JLOC1_35194.1	1660	4e-23	129 - 188	98	59 / 60	plus
Harvest21	ABC32302	316	3e-25	257 - 316	100	60 / 60	plus
Harvest35	U35_36869	316	3e-25	257 - 316	100	60 / 60	plus

Contig Sequence (316 bp)

>U35_36869 316 Hv_44K_v2
GGCCCAATCCCCGACTCCAACCGCCGTTGAGCCCTCCACGCGTCGATATGCTTCTCCTCC
GGCCGCTCCCGCTCCCAGCTCCTGCGCTGCGGGCCAGCCCCGCCGCGCGGAGGCAGCGGC
CCCGGAGGCGGCCGCCGCGTCCTCGCGCCTCCGCCTCCGCCTACGGCGCCGGTGGTATAT
CGGAGGAGGACGCGTTCACCAGGTGCTCGGGGTACCTGTTCGAGGAGGGGCTGGCGACCG
AGGGGGATCTCCCCACCGCGTACGACATCCCGGGCATCGCCAGAGTGTACGGCCGGCGCC
CGCTCCTCGTGCTCCG

Homology of Contig U35_36869 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None