barSeed - Barley Seed Development Database

Probe CUST_1187_PI390587928

Source Contig U35_21118

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1187_PI390587928	Hv_44K_v2	CCATCGTAACCAGGCATCCTGTCTATGTATATATAATTATTACTCCCTCCATCCAAAAAA	1134	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.492	1.487	1.012	0.729	0.315	0.375
Raw	345.484	529.962	318.060	366.185	53.851	71.814

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_979.2	5174	1e-22	4838 - 4896	98	58 / 59	plus
JLOC1	JLOC1_979.1	5166	1e-22	4830 - 4888	98	58 / 59	plus
Harvest21	ABC14256	1207	3e-25	1135 - 1194	100	60 / 60	plus	ABC14256
Harvest35	U35_21118	1207	3e-25	1135 - 1194	100	60 / 60	plus

Contig Sequence (1207 bp)

>U35_21118 1207 Hv_44K_v2
ACTACCGATGCACCCAAGAAGAAAGAGCTGGTCGCTCTAGCCGTGCTAAACCGCGAGGGA
AAAGGAACACCAGTGCTGAACCTAGAAACATGGGAAGTCAAGAAGAAGACAAAATTGGTG
ATCCTAATAGCTTCGCCATTGCGGATGAACTTGTGAAAGAACAGAGAAATGTCAGCAAGA
AGAAGACCGCAAGCCCCTCAGGTCGTTCTAGAGGAAGAGGTCGAAAAAAGATGAATGGTC
GACAAGAAACTACTATAGATGAGGAAGATCCGGAAGTTCAAATGCCTAATTTGTCTGGCG
ATGAGGACTCGCATAAAAGGCACACCGACAAATACATATCAGAAGGAATGACAGTACGTA
GGTCAAACCGGAAGCGGAAACAAGTAACGTACATGGAAGATGACCATGAAGCTGATGACA
ATAATGTCCCTTTGCATCAAGTCAATGATGACCATGAAGCTGATGAAAATAATTTCCCCT
TGCATCAAGTCGATGAAGATGACCCGAGCCGAATTGGCACTGACATTGACACAGCTGGAC
GTGATGCGCAGTCCAATCTGGTCCGTCAGGATACAAGTGAACTGAACAGCGACCAGATGC
ACGTGGACCCAGGCACCGCCGAAGATCTGAATGAAGATCCCTTGGGCTTTGAGTTATATG
ATGACCAGATTGATTCTGCGCCAAAAGAATACCTTTTCACTGGAGGTGGATTCTGTGCGG
AGGAGGATGAACAAGATACAGCGGCTGACGGGGAAACGGTGGATGGAACAGGCGATGCCT
GCGAGGATATTGCCGGGGTTTCAGGCGGTGGTCAAAGTATAGGCTTGTCGTCGACGACGA
CTGGAGAGTCTGCAGAGGAGGCTAGTACGGATGCCAGGGGTGCATTTTGGTCGAAGCGGC
GTAACACTGGCGGCAGTTGTTTGCCCACGCTTGCCAAGCGTAGGAGAAAATAACGGCATA
CTCATGGTGGGGTGTATCACGCCTGTCATTCTTTCCTGTTCCGTTCGAGTTTGTGTAGCT
CACGTTTTCGACATTTTGCTTGGCAACCCGGTAGCTATCTTCTCGTGTATATAGTATAAA
ATGCTGGTGAAATAACTGTTTAGGACGAAGGTTTTGGTTGCTGCAGGTTTACAACCATCG
TAACCAGGCATCCTGTCTATGTATATATAATTATTACTCCCTCCATCCAAAAAAAAAAAA
AAAAAAA

Homology of Contig U35_21118 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g10780.1	1478	7e-54	protein\|flap endonuclease, putative, expressed
Brachypodium v1_2	Bradi1g70850.1	1461	2e-74
Arabidopsis v10	None