barSeed - Barley Seed Development Database

Probe CUST_11879_PI390587928

Source Contig U35_48847

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11879_PI390587928	Hv_44K_v2	TTTTTATCCAGTTCATGGTCACTGGTTACTGTTAGAAGCAGCTTCGCTTTTGTTAAAAAA	11	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62436.1	1550	9e-22	124 - 178	100	55 / 55	minus	ABC09250 ABC09252 ABC53019
Harvest35	U35_48847	508	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (508 bp)

>U35_48847 508 Hv_44K_v2
TTTTTTTTTTTTTTTTTAACAAAAGCGAAGCTGCTTCTAACAGTAACCAGTGACCATGAA
CTGGATAAAAATGGTACAACAATCCTGTACAAAAACGGCTCTCGATCGTGATCATCATCA
TATGCATGCATGTTTTGCCCCGTCTCGGTCGGCACGTACGTGATGAACTGTTGGACTTAG
TTTCCGCATGCATGCAGGGTGGAATGGACCCCGTACTTGTATTTTCGTTACTACATGTAG
TCGCTCACATCCAGGAGACAATCGGACAGGTGCATGTCGACGAACAGCCCGGCGGCGTCG
GCGCTGATGGCGTCAATATTGCTCGTGTTGGCGCAGAAGGCTGCCGTTGAAGCCGAGTTC
ACACGCCCCGCGGGGCTCGATGACGGCGTGGATACGCCGGACCCGACGTTGCAGTTGTTG
CTACTTGTGACCGTGCTGCTCCACTGCAGGTTCGACGTGTCTGACGCCATCTGCATCAGC
GCCGGCATGTAGTCGAGCTCGTTGTCGT

Homology of Contig U35_48847 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None