barSeed - Barley Seed Development Database

Probe CUST_11877_PI390587928

Source Contig U35_48849

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11877_PI390587928	Hv_44K_v2	GATGGTGCATGACCTTCTAATATCCTTGACAGATTAGGAGAATTTTGCCACTATTTAAAT	111	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.030	0.037	0.625	1.713	1.574	2.631
Raw	4.324	9.181	164.764	736.612	220.337	411.012

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57686.1	1909	7e-23	420 - 479	98	59 / 60	minus	None
MLOC	MLOC_57686.2	1908	7e-23	420 - 479	98	59 / 60	minus	None
JLOC1	JLOC1_37420.1	2126	4e-23	1650 - 1709	98	59 / 60	plus
Harvest35	U35_48849	556	3e-25	112 - 171	100	60 / 60	minus

Contig Sequence (556 bp)

>U35_48849 556 Hv_44K_v2
TTTTTTTTTTTTTTTTTGTATCTTTCACAACCAATGTTCAAATTCAGGTTATACATAGTC
CCAGGAAATACAATGACATGGCACATGACTGTGCAGCCCAAGCTTATCACCATTTAAATA
GTGGCAAAATTCTCCTAATCTGTCAAGGATATTAGAAGGTCATGCACCATCACATGAACC
TGACAGTATTGCTCAAAGTTGTCATCGTCAACATTAACTAGCTGGATCATGCTTCTGTTG
ACAAGTTCACTGAAATAACTCTCTGCTTCTTGATACAAATTCCCCCGTTTTGTAGCAACG
AATCCTTCAAGTATCCATTTCCATTTCACTTCTTCACACGAGATATACCCGCCCTCTGGA
TATATACATAAGTACAACAAACAAGTCTTGAGGTGGTGTGGAAGATCCCAATAACCAAGT
AACGATATACTCTTATATGAAAGACCGGTACCAATGGAACCTTGGAGTCTCTCCCATTCA
TCTGGCGTTTGATGTTTATTGGATAGCAATTTTGCGATGGTAATTATAGCAAGTGGCAGG
CCACCACATTTCCTTA

Homology of Contig U35_48849 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None