barSeed - Barley Seed Development Database

Probe CUST_11876_PI390587928

Source Contig U35_24890

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11876_PI390587928	Hv_44K_v2	CCCACCAGTCATAATCAGGTTTAAAATGGTCTAAGCCACTGACTAGTGTTTTTATAAAAA	357	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.291	0.868	1.998	2.331	0.842	1.116
Raw	4.517	27.366	56.891	100.859	12.792	18.332

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65602.2	674	2e-24	566 - 625	100	60 / 60	plus	ABC34055
Harvest21	ABC34055	445	3e-25	358 - 417	100	60 / 60	plus	ABC34055
Harvest35	U35_24890	445	3e-25	358 - 417	100	60 / 60	plus

Contig Sequence (445 bp)

>U35_24890 445 Hv_44K_v2
GGGGACACGAGCAGGCACAAGGGTGCGGCGAGGGCTGCTCCCCAAGCGTAGCGGCGGACG
AGAGAAGGCGCGGCGACAGAGTACGCCCCATCAGCTGCCTCGAGCGTGCGGCAGCAGGCA
CGACGACGGTGTGCGCGAGGTAGCATCGGCATACGCTCACCGGAGAAATCCCACCGGACC
GGTGGAAGACAAAGGTCCCAAATGCTTTTTTGTTTTTAGGGTCAAGGACCCGATTGGTTT
TTTTGCAGGGGTGTCTTTGCAAAACAAAATTGTATTCACATGTATTTTCTTGGTTTCTAG
ATAATTCTAGTTGGAAAGAACTAGGCTTTTCATTTTGCCTCACTCTGTTTAGTGGGACCC
ACCAGTCATAATCAGGTTTAAAATGGTCTAAGCCACTGACTAGTGTTTTTATAAAAAAAA
TATCCTCGAAAAAAAAAAAAAAAAA

Homology of Contig U35_24890 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None