barSeed - Barley Seed Development Database

Probe CUST_11870_PI390587928

Source Contig U35_24897

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11870_PI390587928	Hv_44K_v2	TGAAAACACACCAAGACCGAGCTCACGAGGTGAAGTAAAGACAACTAAGAAAGAGGTACC	545	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.993	1.241	1.491	0.947	0.354	0.418
Raw	86.893	157.274	173.757	183.052	23.211	29.825

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68992.2	2409	2e-24	793 - 852	100	60 / 60	minus	ABC24103
MLOC	MLOC_68992.1	2384	2e-24	886 - 945	100	60 / 60	minus	ABC24103
MLOC	MLOC_68992.3	2315	2e-24	778 - 837	100	60 / 60	minus	ABC24103
JLOC1	JLOC1_45698.1	2351	8e-25	1487 - 1546	100	60 / 60	plus
Harvest21	ABC23242	633	3e-25	546 - 605	100	60 / 60	plus
Harvest35	U35_24897	633	3e-25	546 - 605	100	60 / 60	plus

Contig Sequence (633 bp)

>U35_24897 633 Hv_44K_v2
GGAAATGAGGACAATAGAAAGACTTGCAATGAAGGGATCCGCCTTCAAGAAAGCTCTAAG
ATCAATTCTTCACTGTTTGCATTATCTAATGTCATTTCAGCTCTCAAGAAGAATGAGCCT
CGGGTACCTTATAGAGAGAGTAAATTGACCCGCATACTGCAAGATTCTCTAGGAGGCAAC
AGCCGTGCTGTGATGATAGCTTGCCTGAATCCCGTGGAATACCAGGAGGCAGTCCACACA
ATAAGTATGGCTGCTCGTTCAGGCCATATGGTGACCAACACGCCTTCGACAAGCAAGGAA
CAGACTCCAAAAGTAAAGCTGGACATGGAAGCGAAGTTGCAATTGTGGCTGGAATCAAAG
GGAAAAACCAAGAGTGTCCAAAGGAGGAATGGACTTCTGTCCCCAACTGTATGGAAGACT
CCTTCTTCCATGAGCCATATGAAGCAACCACTATCTGCCCGGGTGTCGGGTAGAGCTAAA
GCAATGGACCAAGACGGTGCTAAAATAAAGAAGGTGCTTTTTGATTCAGAAGTCCATACT
ACTGCTGAAAACACACCAAGACCGAGCTCACGAGGTGAAGTAAAGACAACTAAGAAAGAG
GTACCCCCGTCGTTAACTCCTTGCAAAGAGGAC

Homology of Contig U35_24897 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g38480.1	585	1e-102	protein\|kinesin motor domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g23290.1	587	2e-106
Arabidopsis v10	AT5G02370.1	628	4e-57	ATP binding microtubule motor family protein \| chr5:503444-506388 FORWARD LENGTH=628