barSeed - Barley Seed Development Database

Probe CUST_1186_PI390587928

Source Contig U35_21119

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1186_PI390587928	Hv_44K_v2	CAGTATATATTGTATTATTGAATCAGCAAAGACGAGATCGGATTGCAGCCTAGCTGTGGT	882	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.337	1.626	0.962	0.892	0.422	0.447
Raw	87.419	95.847	50.838	72.022	12.428	13.608

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC16058	650	3e-25	591 - 650	100	60 / 60	plus	ABC16058
Harvest35	U35_21119	942	3e-25	883 - 942	100	60 / 60	plus

Contig Sequence (942 bp)

>U35_21119 942 Hv_44K_v2
CTTGCAAATTCAGGGAGTTCAGAAACCTTCTGTGTGGAATCTCTGTGGTGTCCAATTGAT
ACTTCTGCCTTACTTAATTGGCAAGCTGCTTATTTGGCAGATTTGCTGGTTTTGGAGATA
CCGGGTAAAGAAATCACCATATGCATGGGAGGATGCTTGCTATTTGACTCGGACATCCCT
TAGGATGCCTGCCGGCACATGGCAAAATATTGATGAGTTCACCAAGAAGGATCTCGTGAT
GAAGCGCCTCTGGGAGAAGGCCAACATGGAGAGGCACATAGCGGAGGCGAGAAGAGGATC
GAAGCAGCGTAGAAGATAAAGCTTGTAGGCAGTCCAATTTTGACTGAAGATTACGAGATG
AGGCTGTCTAACAGCATGTCATGTAGGAGGACAACAACATACCCGAGTGGGAGTGGGAAG
CGGGAAGCGAAGGCATACATGAGTCAGGCCTGGGTTGGTCGACCCGTAAACATGGGACAT
TGATACTGAAGAAACATAAGATACAGGGGATTCTTTTACCATGTCGTACACCGTGGAGTG
GATGTATTAATGATAACATTCCTTACGTCTATTTTGATTCTATAGATACATCTACTTGGA
TGCTATTTACATGTCTCCATTCTTGTCTTGGATGCTATTTGGATTCTATAGATACATCTA
CTTGAATTTGATGGAGCGGAACTGATTTTGATGGAGCAGAGTGGTCCCAAATAGGCAACT
GCGACCTATTTGACGCTTGGTTGGCTGGCTGGCTTCTCTCGCGCGTGGGGTCAGACAGGA
GTCTGAAGGGTCACGCAGATGCCTGTCTGGAGATTCAGTTTAGTTTCCTAGATTCAGTCA
GTTTATTACTCAAGATTCAAACCCATCCGTAGGTAGGTGGTGCAGTATATATTGTATTAT
TGAATCAGCAAAGACGAGATCGGATTGCAGCCTAGCTGTGGT

Homology of Contig U35_21119 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None