barSeed - Barley Seed Development Database

Probe CUST_11866_PI390587928

Source Contig U35_36872

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11866_PI390587928	Hv_44K_v2	CACGAGGATGGATCACCTTTGTAAAACAATAAGATTTTAATTTTCCTCTTTCATTGAGCG	566	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.836	0.698	0.618	1.157	3.010	3.210
Raw	2.572	2.526	2.322	13.065	13.273	16.196

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC32305	647	3e-25	567 - 626	100	60 / 60	plus
Harvest35	U35_36872	647	3e-25	567 - 626	100	60 / 60	plus

Contig Sequence (647 bp)

>U35_36872 647 Hv_44K_v2
GGATAGTTAGGCAAGTCCCCATGGCTATGAGGTGCTTGCTGCTATTGGCGGCGTCCCTTG
TAGCCGGATCATGTAGACACCACGGGGAAGCCCGGCCACTGGTGCCGGCGGTCATGCTGT
TCGGTGACTCGTTGCTCGACACAGGCAACAACGACTACATCGACACTGTCGCCAAGGCAA
ATTTCCCTCCATACGGTAGGGACTTTGAGGACCATATCGCCACAGGGAGATTTTGCAACG
GCAAGATCCTCAGCGATTTCATAGCCCGGACGCGTCGGGAGAGAATCTTCTTAGTGGAGC
TAACTTTGCATCGGCCGCATCCGGCTATTACGACCAAACGGCGCATATGTATGTAAGTAT
ATAATATAACAATTACGGATTTGGTGAGAATTAACAAAGTCTCATGTAACTCCTATGCCA
TTTGATTTTACACGGCTGTTTTTTTCATTTTGGACTAGACTTAGTGAATTCTCATACGAA
GGAGAGCTAACCACTGCTTACTTTCATATGCATTAATATTAAATCTGCTCTTGACTTTCC
CCTCAACAAAAATCTTGCCTTAGCCACACGAGGATGGATCACCTTTGTAAAACAATAAGA
TTTTAATTTTCCTCTTTCATTGAGCGTAATGATGTCTATCTTGGAAA

Homology of Contig U35_36872 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None