barSeed - Barley Seed Development Database

Probe CUST_11858_PI390587928

Source Contig U35_48852

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11858_PI390587928	Hv_44K_v2	CAGAACTGCTAAGTAATTAAGGCCCCGTTTGAAACCATAATAGATTATGATAATCTGGAT	21	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.170	2.048	0.885	0.945	0.642	0.552
Raw	24.123	32.154	13.697	24.904	3.901	3.718

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365108	1288	2e-24	1215 - 1274	100	60 / 60	plus	None
Harvest35	U35_48852	567	3e-25	22 - 81	100	60 / 60	minus

Contig Sequence (567 bp)

>U35_48852 567 Hv_44K_v2
TTTTTTTTTTTTTTTTTCATAATCCAGATTATCATAATCTATTATGGTTTCAAACGGGGC
CTTAATTACTTAGCAGTTCTGTACATAAACACACGATCAACTTCAGTGTGTTTTGTCTGT
GATGATATTATAGGATTATAGTTCTTGGCGGTCTAGTTGATCTTGGCGAAGTCCAGCGTC
TTCTTGCCCTCGAGCTTGCTGGTGACGTAGTGCCGGCTGTACTCGCCGTGCTTGAACCTC
CGGTACCGGCACGGCTCCCCGTCGGCGACGAGCTCCGGCAGTGGGCCGAGTTCTACGTCG
TATGCCGGTGCGTAGAACGTCACGATGGACAGCCGATCCTGCTCGCCGTTGGTCACCGCC
CGGTGCTCGACGCTCTTGTACCTGCCGTTGGTGAGCACCTCGAGCGAGTCGCCGAGGTTG
ACGACGAGGGCGTGCGGGACGGGGTGCACGGGCAGCCAGGTGCCGTCCCTGAGCACCTGC
AGCCCCGCGCGGCCGGCGTCCTGCTGGAGCACGGTGACCGCGCTCCCGTCGGAGTGCGCG
CTCAGCCCCAGCACCAGGTCCGGCCGC

Homology of Contig U35_48852 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g70930.1	367	2e-64	protein\|leucoanthocyanidin dioxygenase, putative, expressed
Brachypodium v1_2	Bradi2g60070.1	368	4e-64
Arabidopsis v10	AT3G21420.1	364	8e-52	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr3:7541579-7543221 FORWARD LENGTH=364