barSeed - Barley Seed Development Database

Probe CUST_11856_PI390587928

Source Contig U35_48854

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11856_PI390587928	Hv_44K_v2	GCAGTTTCACATGCATATGATATGATACATTTGGCATTAATTAAACACTGGATTCCAGAG	22	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.606	4.463	1.639	0.342	0.058	0.039
Raw	1409.379	2701.461	840.076	276.986	16.765	11.993

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18560.1	1601	7e-23	824 - 883	98	59 / 60	minus	ABC12734
MLOC	MLOC_18559.5	2639	7e-23	2528 - 2587	98	59 / 60	minus	ABC12734
MLOC	MLOC_18559.4	3260	7e-23	2545 - 2604	98	59 / 60	minus	ABC12734
MLOC	MLOC_18559.1	5932	7e-23	4507 - 4566	98	59 / 60	minus	ABC12734
JLOC1	JLOC1_12844.1	1767	4e-23	895 - 954	98	59 / 60	plus
JLOC1	JLOC1_12843.2	5133	4e-23	4398 - 4457	98	59 / 60	minus
JLOC1	JLOC1_12843.1	5081	4e-23	4346 - 4405	98	59 / 60	minus
Harvest35	U35_48854	492	3e-25	23 - 82	100	60 / 60	minus

Contig Sequence (492 bp)

>U35_48854 492 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGAAACTCTGGAATCCAGTGTTTAATTAATGCCAAATGTATCA
TATCATATGCATGTGAAACTGCTGGATTTCTAGACAGGCTGCCCTTGAGTGAGGCAGTTT
AACTCTGGAAATTTACAGGTCTTCCACATATGAATCTATGAGCTCCCCTCTCCGGAAGGC
CGGAGGTCGTCGGAGGTGGCGTTGAAGTGCGCCAGCGTGTGCGCCCACCGGATGTCCTCC
TTGAGCTGGTGCACGCCAATGGCGTCCTCCAGGAAATCCTTGGCCTGGGCGCCCTTGTAG
TCGTACATCCTGGGGAAGATGTTAACCCTGTTCTTGGCCTTGCCGCCCTCGTTCAGCCAG
TTCCCCATTGTCACGTCCTCCACGCCTTTGGCCTTCCTCCTGACCATGTCGGAGTCGGCG
ATCCACCGGACGAGGTCCCAGGAGAGCACGTACCCCATGCCGAGCATGAACGGCGGCGAC
TCGCGGTCCATG

Homology of Contig U35_48854 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g16710.1	317	5e-53
Arabidopsis v10	None