barSeed - Barley Seed Development Database

Probe CUST_11853_PI390587928

Source Contig U35_48857

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11853_PI390587928	Hv_44K_v2	GTGTTTCACGGTTCCTAAACTTTAGTTGCATGAAAATGAATTGTGCGTTGGTCCAAAAAA	7	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	9.528	7.895	0.735	0.536	1.226	1.092
Raw	56.329	67.447	4.318	3.345	2.980	2.909

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71615.5	1324	3e-21	1263 - 1316	100	54 / 54	plus	None
MLOC	MLOC_71615.3	1284	3e-21	313 - 366	100	54 / 54	minus	None
MLOC	MLOC_71615.4	673	3e-21	19 - 72	100	54 / 54	minus	None
MLOC	MLOC_71615.1	1645	3e-21	536 - 589	100	54 / 54	minus	None
MLOC	MLOC_71615.2	2093	3e-21	419 - 472	100	54 / 54	minus	None
JLOC1	JLOC1_47611.2	2325	2e-21	1590 - 1643	100	54 / 54	plus
JLOC1	JLOC1_47611.1	2196	2e-21	1461 - 1514	100	54 / 54	plus
Harvest35	U35_48857	531	3e-25	8 - 67	100	60 / 60	minus
Harvest35	U35_49040	484	1e-23	12 - 72	98	60 / 61	minus

Contig Sequence (531 bp)

>U35_48857 531 Hv_44K_v2
TTTTTTTTTTTTTGGACCAACGCACAATTCATTTTCATGCAACTAAAGTTTAGGAACCGT
GAAACACAAAAATATCGATCGTGGCAGCAAATATCGGATGATCATGACGTGAAGAGCTGG
CTCCCGAGGGTGATGATGGCGGTGCCGTCGCCCATGACGGTCGTTAGTGTCATCTCCTTC
TCCAGGATGCGGTCAAGCTCCGCCGCGACCAACCGCATCTTGGGCCGCCTCCTCACCGCC
GACGGGCTCAGACACTGCAACGTCAGGCCGACCAACTCCTTCATGCCCTCCGAGGTGAAG
CTGCCACCAAGCCTCGGGTCCGCCACCTCGTCTCCCGATGCCTCCAGCCAATGAGCGAAA
GATTCAGTTGATTCTGGACAAACCAAGCTGGCGGCCTCCCTACCAGTGATGAGCTCGAGA
AGAAAAACCCCAAGCTGTACACGTCGCTGCTCGCAGAGAGCTGTGCCAAGGAATGTGCCT
CTGGATCCTGGTAGACGCCGGAACGGAACCCATTGAGCGGCGAGCCGGGGT

Homology of Contig U35_48857 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None