barSeed - Barley Seed Development Database

Probe CUST_11852_PI390587928

Source Contig U35_48858

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11852_PI390587928	Hv_44K_v2	GCATGATCATTGTACTGTCAACATATACGTGTACCCATAATAGAATGGAAGAGATTATGA	16	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53764.1	836	7e-23	630 - 689	98	59 / 60	plus	None
MLOC	AK362864	2509	3e-22	2451 - 2509	98	58 / 59	plus	ABC01962 ABC01972 ABC44247
JLOC1	JLOC1_34558.1	922	4e-23	621 - 680	98	59 / 60	plus
Harvest35	U35_48858	489	3e-25	17 - 76	100	60 / 60	minus

Contig Sequence (489 bp)

>U35_48858 489 Hv_44K_v2
TTTTTTTTTTTTTTTTTCATAATCTCTTCCATTCTATTATGGGTACACGTATATGTTGAC
AGTACAATGATCATGCTCCACAAAGAGGAGAAGACCGAGACCAAGAACATCGTCCATGGT
TTCAAAACGAAGTTCGATTTTAAAAACGCAAAAGGAAAAAAAAAAAAGAAAAAAAAACGC
CATCTCTTCTTCTATGAACAGAGCGAGTAAAAATGGCGGCTAAGGCCATGCATGGATCCC
TCATCCCTCCCTACCCTTTGGTCCCCTGCGCCGCCATGCCGCGGCCGTAGTGCCACGAGT
GGCCGCCGAGCCCTCTGGCGAACCGCTGCAGCGGGTTCAGCCGCGCGCACCCGACGATGC
CCTCTGCCGCCGCCGCCAAGCGGGGAGGAGGAGGGGGAGGGCGCCTTGGTCCCCTCCAGG
AGCGCCGCTGCGAACGGGTCAAAGTCCGTGCCGGAGCCGACCCTGCTCCGTCGCCGGGGC
GACCTCAGG

Homology of Contig U35_48858 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None