barSeed - Barley Seed Development Database

Probe CUST_11851_PI390587928

Source Contig U35_48859

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11851_PI390587928	Hv_44K_v2	CGGCTGGGCATGGTATCTTCTCTGCGCTGAAATAAACAGGCATCCATTCCTTTCAAAAAA	11	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.852	5.854	1.329	0.708	0.345	0.333
Raw	117.739	184.029	36.526	31.733	3.373	3.997

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_48859	532	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (532 bp)

>U35_48859 532 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAAAGGAATGGATGCCTGTTTATTTCAGCGCAGAGAAGATACC
ATGCCCAGCCGTGTTTCTGTTGATGTGTTGGCGTGTCTGTCAGTCGATTACTACATTCTT
GTGATATCAAACCACTATCAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGAAGAAAGAT
GTGTCTGTCTGTCTGTCTGTACAAGGCTAGCAAAGCAGGGTAGGGTTGGAGGGATGAACT
CGCAGGTCCAGAGATGCTGCCGTCCATGTCCATCCATCCATCCATTTCATTTCCTCCTCT
TTGATGACGACGATGATCGCCTCCAGATCACTCCCAGCGGCAGCGCGAAGATGGGGAACG
GGATCTTGGGCGGCGGGAGGTGCAGCCGTATGGTCTCCACCTGGGTGAGCTCCGCCTCCA
CGGCCCCGCGCCGCGCCGTCGCGTCCTGCCGGACGGCCAGCACCCGGCACCCCAGCCCTC
TCACTCCGGCGTACGGGCTCGGCGACCCGTAGAGGAAGCTCTTGTCGTGGAG

Homology of Contig U35_48859 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None