barSeed - Barley Seed Development Database

Probe CUST_1184_PI390587928

Source Contig U35_21122

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1184_PI390587928	Hv_44K_v2	CATTCCTAACATTGAACGCTACGACAGCTCAGAATAGCTATGACCAGAATGAAGATGATC	623	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72321.3	2071	2e-24	1194 - 1253	100	60 / 60	minus	ABC26431 ABC34448
MLOC	MLOC_72321.7	1683	2e-24	788 - 847	100	60 / 60	minus	ABC26431 ABC34448
MLOC	MLOC_72321.8	1620	2e-24	725 - 784	100	60 / 60	minus	ABC26431 ABC34448
MLOC	MLOC_72321.4	1850	2e-24	736 - 795	100	60 / 60	minus	ABC26431 ABC34448
MLOC	MLOC_72321.5	1663	2e-24	868 - 927	100	60 / 60	minus	ABC26431 ABC34448
MLOC	MLOC_72321.1	1637	2e-24	880 - 939	100	60 / 60	minus	ABC26431 ABC34448
MLOC	MLOC_72321.2	1700	2e-24	943 - 1002	100	60 / 60	minus	ABC26431 ABC34448
MLOC	MLOC_72321.6	1486	2e-24	611 - 670	100	60 / 60	minus	ABC26431 ABC34448
JLOC1	JLOC1_48094.4	1618	8e-25	692 - 751	100	60 / 60	plus
JLOC1	JLOC1_48094.3	1673	8e-25	684 - 743	100	60 / 60	plus
JLOC1	JLOC1_48094.2	2064	8e-25	1075 - 1134	100	60 / 60	plus
JLOC1	JLOC1_48094.1	1589	8e-25	648 - 707	100	60 / 60	plus
Harvest21	ABC14655	726	3e-25	624 - 683	100	60 / 60	plus
Harvest35	U35_21122	726	3e-25	624 - 683	100	60 / 60	plus

Contig Sequence (726 bp)

>U35_21122 726 Hv_44K_v2
CCTACGAGAACCAGAGTCCAGCCGACGAGCCGCCGCCTCGCGATCACCGAAGGCAATGGA
GACGCCGTCTCCATGGAGGGTCCTCGAGTTCTACAGCGGTATCGGCGGCATGCGGTACTC
CCTAGCATCGTCGGGCGTTCGCGCGGAGGTGGTGGAGGCCTTTGACATCAACGACGTCGC
CAACGACGTATACGAGCACAACTTCGCCCACCGCCCCTGCCAGGGAAACATTCAAACACT
CACTGCTGGTGATCTAGACAAGTACAAGGCACATGCATGGCTCCTTTCTCCTCCATGTCA
ACCATACACACGGCAAGGACTTCAGAAGCACTCAGCTGATGCCCGGGCCTTTTCATTTAT
AAAGATTTTAAGCCTTATGCAAAACATGAGCTTTCCTCCACAAATGTTATTTGTGGAGAA
TGTTGTCGGATTCGAGGTGTCTGATACACATGACCAGTTGCTAGGGGTCCTTTCAACTCT
CAATTTCAACACACAAGAATTCATCCTAAGCCCCTTGCAGTTTGGTGTCCCATATTCTAG
ACCGCGCTACTTCTGTTTGGCGAAACAGGAACCTATGTGTTTTCCAAATCCATCAGTCAA
TGAGAAGCTGCTTAGGACACCTACATTCCTAACATTGAACGCTACGACAGCTCAGAATAG
CTATGACCAGAATGAAGATGATCTGGNAAGTAGTATGTAATCCAATAAGAAACTTCCTTG
AAGCAC

Homology of Contig U35_21122 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g42630.3	271	1e-122	protein\|C-5 cytosine-specific DNA methylase, putative, expressed
Brachypodium v1_2	Bradi2g43310.1	377	7e-132
Arabidopsis v10	AT5G25480.1	383	2e-95	\| Symbols: DNMT2, AtDNMT2 \| DNA methyltransferase-2 \| chr5:8870069-8872199 REVERSE LENGTH=383