barSeed - Barley Seed Development Database

Probe CUST_11841_PI390587928

Source Contig U35_48865

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11841_PI390587928	Hv_44K_v2	CTGCTACGTACCACTAATTGTTGATTGGTTGGTTGATGGAGGAAATTAATGAAATCTTTC	36	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365238	1534	2e-24	1460 - 1519	100	60 / 60	plus	ABC21171
MLOC	MLOC_17143.1	667	2e-24	513 - 572	100	60 / 60	plus	None
JLOC1	JLOC1_11839.1	647	8e-25	498 - 557	100	60 / 60	plus
Harvest35	U35_48865	490	3e-25	37 - 96	100	60 / 60	minus

Contig Sequence (490 bp)

>U35_48865 490 Hv_44K_v2
TTTTTTTTTTTTTAGTTTTTTTTTAAAGATGTGAATGAAAGATTTCATTAATTTCCTCCA
TCAACCAACCAATCAACAATTAGTGGTACGTAGCAGCAGTAGTACAGATCAATCAACAAG
CTGTTAATCCAACAACCGGCAGGGGTTTGGTGGATGGGTACACCCCGTCCATGAAAAAGC
AGACAGCCATTTGCTCCTTCTTCTTCTCTTATCTCTTATACTAACGTGTTTCTGTCTTGT
TCGTCGTCGTCGTCGACGATCCGATCAAAAAAAGGCAGAAAAGAAAAACGAATCAACCGG
AAACCAAACCAAACCAACGATCTCACTAGGGCCGCTAATTACTAGTGCTATCTAAACCAA
ATCAAATCTTAACCCGGCGATCGGACTGGTTGATTTGCCAATTGATTAATTGATTGACAC
GATCGACCGCCGCCTGAAATCTCCTAATTAATAACTTGGATTAACTAGATCCCCCGCGCG
ATCGACCGCG

Homology of Contig U35_48865 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None