- Probe CUST_11840_PI390587928
- Source Contig U35_33368
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11840_PI390587928 | Hv_44K_v2 | TGGACGTCAGAGTTGGGAACAAAGAGTTGAATGACTACTCGGCTTTAAATCCGTTGATTT | 476 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.311 | 2.290 | 1.215 | 0.761 | 0.309 | 0.377 |
| Raw | 3246.413 | 5042.673 | 2328.897 | 2290.066 | 330.888 | 436.025 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK373925 | 1522 | 2e-24 | 1337 - 1396 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_18026.2 | 1176 | 2e-24 | 376 - 435 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_18026.1 | 668 | 2e-24 | 475 - 534 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_12457.1 | 908 | 8e-25 | 585 - 644 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_33368 | 539 | 3e-25 | 477 - 536 | 100 | 60 / 60 | plus |
Contig Sequence (539 bp)
>U35_33368 539 Hv_44K_v2 TGGCGGGAACAAAATTGCCTACTCTGTTCAAGTTATCAAGTCTGTATTCTGAATGTCATG TACTGTATTCTGTTCTCCTGTGCTTAGGCATGTATACTGGTGTTTAAATTGCTATTTTTG CCTAAATCGGTTAGGTATGTTATGATTGGAGCAAGGGTGCTGAGAAGCATAATCCTTCTA CTGCAAAGACAAATATCTTTCTGCATAGCGTGCAGGAATCTGATGTCAAAGGAAAGCCCC GTACTGGAAAAAAGTAGACTTGGAAATGACAAGCTGCAGATCTGTGCTCCGAACCTGATG AGTTTGCTGTTGCCTGATGCTAATTACCCGCATTAGTGTTTAGATCTTGACTCTGCAGGG CATTTTTTTCATCTCTGAGACTGCAAGCATATCTTCTATAAAAAGCAGTTGCATTTCTTC CCATGTAAATGGCAGGTCGTATTTTGTTGCTGTAGTTCAGCTGTTTTTCCGCAAGTTGGA CGTCAGAGTTGGGAACAAAGAGTTGAATGACTACTCGGCTTTAAATCCGTTGATTTGCT
Homology of Contig U35_33368 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |