barSeed - Barley Seed Development Database

Probe CUST_11836_PI390587928

Source Contig U35_45340

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11836_PI390587928	Hv_44K_v2	GGCTCTCCCGGCTCTGGCTCACTGACAGGCTCAAATCCTTCCTCGACGAGCAGGGAATCT	205	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.983	1.515	1.185	0.796	0.414	0.460
Raw	4496.063	5309.327	3686.313	3821.567	700.291	860.964

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54900.2	2099	7e-23	1401 - 1460	98	59 / 60	minus	None
MLOC	MLOC_54900.1	3402	7e-23	1430 - 1489	98	59 / 60	minus	None
JLOC1	JLOC1_35365.1	2120	4e-23	638 - 697	98	59 / 60	plus
Harvest21	ABC44093	265	3e-25	206 - 265	100	60 / 60	plus
Harvest35	U35_45340	265	3e-25	206 - 265	100	60 / 60	plus

Contig Sequence (265 bp)

>U35_45340 265 Hv_44K_v2
CACGGGGAGGCGTGCCGGTACGCGCACACGGAGGAGGAGCTGCGGCCGCGGCCCGACGGC
ACGTGGGACCCCACCTCCGACCGTGCCAAGAAGCTGCGCAGGGTCTCCGAGGAGGACGGG
GAGGCCGTGGAGGACGAGAAGAGGGGGCGGTGGGGGCAGGAGGAGGTGACCATCGACGAC
AGCTCGCTGGACAAGTGCCTCGTCGGGCTCTCCCGGCTCTGGCTCACTGACAGGCTCAAA
TCCTTCCTCGACGAGCAGGGAATCT

Homology of Contig U35_45340 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None