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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_11817_PI390587928Hv_44K_v2GGAGATGCTTCGGGTTTTGAAATTGTCTTCTTCTTACCAGACAGTGAAGATGATGTTAGA0GeneList: skyblue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.8740.8081.8241.5390.9250.965
Raw 30.04238.92686.820107.87924.38128.105



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36228929733e-211640 - 169310054 / 54plus ABC08681 ABC18066
MLOCMLOC_57704.327583e-211315 - 136810054 / 54plus ABC08681 ABC18066
MLOCMLOC_57704.238763e-212422 - 247510054 / 54plus ABC08681 ABC18066
MLOCMLOC_57704.142483e-212422 - 247510054 / 54plus ABC08681 ABC18066
JLOC1JLOC1_37434.326552e-211148 - 120110054 / 54plus
JLOC1JLOC1_37434.229522e-211148 - 120110054 / 54plus
JLOC1JLOC1_37434.128082e-211284 - 133710054 / 54plus
Harvest21ABC0868022986e-221541 - 159410054 / 54plus
Harvest35U35_333715273e-251 - 6010060 / 60minus
Harvest35U35_306929876e-221541 - 159410054 / 54plus



Contig Sequence (527 bp)

>U35_33371 527 Hv_44K_v2
TCTAACATCATCTTCACTGTCTGGTAAGAAGAAGACAATTTCAAAACCCGAAGCATCTCC
ATAGTGTTTTGCCAGCATATCTAATCCTGTTCTAGCAGAGATATTAACAATGTCCGGTCT
ACAAAGAGAAGTGCAATATATGCCACGTCAATAGACTATACAAGAAACTTCAGAAAAAAA
GTTGAAGTAGTTTGTACTCACAAAGGTATCCCAACGCCCCTTCTTATAGATAAGCAGCGA
GCACGACAAACAAGAGATCCACCTTTGGCAATACTGCCACGCCAGAAGTGCCCAAGGCAA
GACGTTTGGTGTACCATGCCCTGGATCCGAATAACAGAGCTTAAGCTCTCGTCAGCAACC
GGTTGAAGACCCTCACTGCCTGCCCTTACATGGTAAGGGTCCATGCCAGCATTCAACCTC
ACCCTTTTGGCTTCTCTCGGATCAAGTGCATTATGAGCAGAATGTCCAGTCAACACAGAT
GAGCCAGCTTCAGGTGCTGGAAGGATACCACCAGTGACTGGCATTGC



Homology of Contig U35_33371 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None