barSeed - Barley Seed Development Database

Probe CUST_11814_PI390587928

Source Contig U35_19081

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11814_PI390587928	Hv_44K_v2	GAGACAATGTTGCAAGAACTGTCATGGTAAAAGTAAAACATTGCGGTGTAATATGCAAAA	931	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.116	0.259	0.801	1.594	1.211	1.255
Raw	65.266	247.492	638.123	2007.900	519.487	591.820

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76311.1	624	7e-23	6 - 62	100	57 / 57	minus	ABC11335 ABC11336
MLOC	MLOC_76309.1	467	7e-23	97 - 153	100	57 / 57	minus	ABC11335 ABC11336
JLOC1	JLOC1_50894.1	643	4e-23	563 - 619	100	57 / 57	plus
Harvest35	U35_19081	1004	3e-25	932 - 991	100	60 / 60	plus

Contig Sequence (1004 bp)

>U35_19081 1004 Hv_44K_v2
AACCCACTCCCACTCCCCACCCCCCACTCCCCCCGAGCTCAGTGAGCCCCAGCACCAGCA
GCCGCCGCCGGAGCAGGTCACCGATGGCCGGGTTCGCCACCTCGCGGCCGGCCTCCCTCG
CTCTCTCCGGCTTCCTCATCTTCCTCAACGTCTTCGCCTTCCTCCTCGCCGTCGGCGCCG
AGCAGCGACGCAGCACCGGCAAGGTGGTGCCGGACGAGTACGACGAGCGGTCCTACTGCC
TCTACGACACAGACGCCTCCACCGTCTACGGCGTCTGCGCCTTCTTCGTGCTCCTCCTCG
CGCAGCTGCTGGTCACCGGCGTCACCCGCTGCCTCTGCTTCGGCCCGGCCCTCTCCTCCC
GCGGCTGCGCCCTCGCCGCCTTCGCCGTCTCCTGGCTAACGTTCCTCATCGCGGAGGCAT
GTCTCGTCGGAGGATCCGCGAAGAACGCGTACCACACCAAGTACCTCGGCTACTACACGA
AGCATGACCTGGTCAGCTGCGCCGCGCTCCGCAAGGGGGTGTTTGCAGCAGCCGCCGCCA
TGACGCTCATCAACCTGGTGGCCTCCCTGGTGTACTACTGGAGCTACTCGAAGGCGGCCG
ACGGCGGGTTCATCAAACACCAGAACGAGGCTGGCGTGGGCATGACCGACTACGGCCTCG
ACAGGGGCAGTGGCCCTGGGCTCTGAGTGAGTGGGTATGTGTTGCTTTGCTTGTCTTGTG
GGATGGGAGGTTGCTGTAACTTGCTTGTCTTGTGGGCTGGGAGGTTGCTGTAACTTATGT
GTGCCTGAAGCTCTGTTGTTGCACCTGCATCTGATGATCAGAGTGACACGCAAACGGTAC
TGTAACTGCACAATATGTTTATAGTTTGGATCGCCCTTGGTGACATAGTGTGGATCGCCT
TTGGTGAGATCGTCGCCTTCGGTGTACTCGAGAGACAATGTTGCAAGAACTGTCATGGTA
AAAGTAAAACATTGCGGTGTAATATGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19081 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g16130.1	200	1e-105	protein\|fiber protein Fb34, putative, expressed
Brachypodium v1_2	Bradi3g19210.1	200	3e-112
Arabidopsis v10	None