barSeed - Barley Seed Development Database

Probe CUST_11813_PI390587928

Source Contig U35_19082

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11813_PI390587928	Hv_44K_v2	GCCTCGACTATGCCTTGCTAGCACCATATGATGTCAGTGATTAATATAATGTTAGTTTTA	664	GeneList: lightcyan1 MasterList: Reassembly_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.013	0.136	0.984	2.340	1.452	2.106
Raw	120.184	2820.756	17115.533	57158.467	14672.057	22629.533

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38646.1	921	2e-24	678 - 737	100	60 / 60	plus	ABC09845
JLOC1	JLOC1_25152.1	819	8e-25	685 - 744	100	60 / 60	plus
Harvest21	ABC09845	817	3e-25	665 - 724	100	60 / 60	plus	ABC09845
Harvest35	U35_19082	817	3e-25	665 - 724	100	60 / 60	plus

Contig Sequence (817 bp)

>U35_19082 817 Hv_44K_v2
CTTCCCTACACATCCTTCTATATACATTCAGTTCCACCTATATGTTGGATTCAAGAGAGT
TTGAAGCTTCTAGGTAGCCTTGCACCAATGACAACAACTACAACCTCTATATTCTTCTCC
GCCATTCTATTTAGTCTTCTTTCTGTTGCAATCACTGGTGAGACAATTGAGTCTGGCAGT
GGTGGGGCCCGGGTGACGAACCTCATTGTGGAAGCATGCAAGAACGCATCAGGCTATCGT
CGTGGTGTCACAAATTTCACACAGGAATTTTGCTTGTCAACCCTTCAGTCGGACAATAGG
ACTGTGGAGGCAAAGGATCACCTTGAACTGGTGGTCATTGCCATCGACATCCTTAAAGGC
CGCCTCACTACTGCTAATCACAACATTGATAAAATGCTACAAAATGCAAAGAAAGGCACA
GTGCCAATGCGCGATCTCAGTTGCTGCAAGGTGTACTATGATACAACAATGAGAATCATC
AATATATGTGATTACATGATCACAGACTTCCGCGGACATAAGGGCAGGCTGAAGTCCTTG
GAGCTTCCTCGTTGTGTTGACAGAGCAGGCTACCCAGTCGACGACTGCTGGTCCGATCTT
GAGTACAATATGCCATGGGCCGATGCACTCATCAGAGAAAATCTCGAGATTGCCGTGCTG
GTCAGCCTCGACTATGCCTTGCTAGCACCATATGATGTCAGTGATTAATATAATGTTAGT
TTTATCTGTAATAAATGATGTCCTAGCTACATCAATCTTATTTTCTTTTTGAATAATGAT
AAAAGTTTCACATTTGTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19082 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None