barSeed - Barley Seed Development Database

Probe CUST_1180_PI390587928

Source Contig U35_21127

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1180_PI390587928	Hv_44K_v2	GCAGTCTCTGTACATAGATTGCGCATTCATCATATGTATAAAAAGCTTATTTGTGTCCAA	791	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38475.3	1577	2e-23	83 - 140	100	58 / 58	minus	ABC17501
MLOC	MLOC_38475.1	1849	2e-23	523 - 580	100	58 / 58	minus	ABC17501
MLOC	MLOC_38475.2	2194	2e-23	523 - 580	100	58 / 58	minus	ABC17501
JLOC1	JLOC1_25020.2	1572	1e-23	1266 - 1323	100	58 / 58	plus
JLOC1	JLOC1_25020.1	1729	1e-23	1423 - 1480	100	58 / 58	plus
Harvest35	U35_21127	866	3e-25	792 - 851	100	60 / 60	plus

Contig Sequence (866 bp)

>U35_21127 866 Hv_44K_v2
GAGAGAGACTGCCCTTGTTAAGTCTGATCAACCTTCTGCAAAACTGATTCCTGAAAATAA
ACCTGTAACAAAAGCTCTGAAGGTTGAAGTCCTTCCCAATCTACATTCAAAACCTGAGGG
TACCATACAAAAACCAAAGGGCCATTCAGAGCTTGATTACAAGGAACCTTTAACGGAAGC
TCCGAAGGTTCAAGTGTCTCCCAGTCTGTACAAGGAACCTTTAACAGAAGCTCGGAAGGT
TCAAGTGTCTCCCAGTTTGCCTTCAAAACCTGAGTGTTGGGGGACCATCCAAAAACCAAA
GGGCCATTCAGGGCTTGATTACTCGAAATGGGACAAAGTTGAGAATGATTCGAGTGAAGA
TGACGATGATGATGAAGAAGATGACTTGCCTCGATATAAATTCAAAGTCAGAACCATCGG
TGTGCGTACCGTGAAGTGAATGGGATCATCGATAAATAAGTTTACTCCATGGTCTGTGTA
TAGCTGTTTGACAGCATCCCTGCTAACTGTGGTCTCATCTGTTCGGTTGCATCTTGAGAT
ACTTGGATGAAGTGTTGCCGATTGGTGGGTGAAGACATGAGTACCCGCTGCTCTCGTCTC
GTGCGCTGCAGCTCAGGTTTTTTGACCTTAGCCAAGGAAACAAGTCTGGAATGAAATCAT
GTTTTCAGCGCAACCGCGGCAACCGTGGGTTGGAGCACACAGCACAGCATGTGTTAATCA
TGTAGGGAGCCCCTTTAGATTCGAGCTAACAATCTTAGACCATTGTTCATCTTCGTTGAT
TCTATAGCCTAGCAGTCTCTGTACATAGATTGCGCATTCATCATATGTATAAAAAGCTTA
TTTGTGTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_21127 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None