barSeed - Barley Seed Development Database

Probe CUST_11794_PI390587928

Source Contig U35_19092

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11794_PI390587928	Hv_44K_v2	AAGCTGCTCCGTTTTATTCTCCGAATAAAGATGACACCTTTCAGAGCGTCTTTCAAAAAA	1554	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.567	2.290	1.069	0.762	0.269	0.256
Raw	48294.600	44028.733	19407.833	19614.433	2871.903	2869.267

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60480.4	1676	9e-22	1557 - 1611	100	55 / 55	plus	ABC11913 ABC30024
MLOC	MLOC_60480.2	1721	9e-22	1597 - 1651	100	55 / 55	plus	ABC11913 ABC30024
JLOC1	JLOC1_39442.2	2389	5e-22	2129 - 2183	100	55 / 55	plus
JLOC1	JLOC1_39442.1	1892	5e-22	1632 - 1686	100	55 / 55	plus
Harvest21	ABC30024	437	1e-23	365 - 425	98	60 / 61	plus	ABC30024
Harvest35	U35_19092	1625	3e-25	1555 - 1614	100	60 / 60	plus

Contig Sequence (1625 bp)

>U35_19092 1625 Hv_44K_v2
GCACTCGGAAGCCACACGCCACTCGTCACATCGGAATGGACAAGCACAGTCGACCTCTGC
TTGCTCTGCTTTCCCTCCTCCTCTGCCTCTCCCAGCTCCGGGCCAGCTCCGCCAGCTCCG
TCACCGCCGGCAAACCGGACGGCACGGAGCTCTGGGGGTTCGTCGAAGTCCGACCAAAGG
CTCACCTGTTCTGGTGGTACTACAAGAGCCCCCAGAGGGTGTCGACGCCGTCCAAGCCAT
GGCCGACCGTCCTCTGGCTACAGGGCGGTCCTGGAGCGTCGGGGGTGGGCATCGGCAACT
TCATGGAGATCGGCCCCCTCGACGTCAACCTGAAGCCTCGAAACTCCACGTGGCTGCAGA
AGGCCGACCTCATCTTCGTGGACAACCCTGTGGGGGTCGGGTACAGTTACGTCGAGGACG
ACAGCCTACTGGTGACGAGTGACTGGCAGGCGGCCACGGACGCCACCACGCTCCTCAAGG
CGCTGGCCAAGGAGCTGCCCACCCTGCAGCAGGGGAGCCCCCTCTACCTCGTCGCCGAGT
CCTACGGCGGAAAGTACGCGGCCACACTCGGCGTCTCGGTCGCAAGGGCCGTCCGTGCCG
GCGACCTCAAGATCAAGCTCGCAGGCGTCGCGCTCGGCGATAGCTGGATCTCGCCGGAGG
ATTTCACGCTCGCCTACGCGCCGGTGCTCCTGGATGTTTCGAGGCTGGACGACAACGCCG
GCGACGCCGCCAAGAAGAAGGCGGCGACGGTGAAGGAGCAGATCGCGGCCGGGCGGCTGG
CCGCCTCGCAGGGGTCGTGGTCGGATCTTTTGGATTTCATTCGCTCCAAGAGCGCCAGCG
TCGACATGTACAATTTCTTGCTCGACGCCGGCATGGACCCGGTGGCGGCGGACCTGCCGG
CGACCTCGTCGAGCAAAACGCAGGTGACGAAGTACTCGACGTACCTCGCCGGAAGCCAGG
AGGAAGCCGGCGCCAACACCCTCAGCGGCATCATGAACGGGGTCATCAAGGAGAAGCTCA
AGATCATCCCCAAGGAACACGAGTGGTACGAGCTGTCAGACCCCGTCTACAACGCGCTGG
TCAACGACTTCATGAAGCCAAGGATCGACGAGGTCGACGAGCTGCTGTCTTACGGCGTGG
ATGTCACGGTTTATAACGGCCAGCTCGATGTGATTTGCTCGACCAAGGGCGCGGAAGCAT
GGGTGCAGAAGCTCAAATGGGATGGGCTGAAGAACTTCCTGAGCCTTCCGCGGGAGCCTC
TGTACTGCGGATCATCCACGGTCACCAAGGCCTTTGTCAGGTCCTACAAGAACCTGCATT
TCTACTGGATCCTTGGCGCTGGCCACTTCGTGCCTGCCGACCAGCCTTGCATTGCGCTGA
GCATGATCGGTGGCATAACCCAGTCTCCAGCCAGCTAGGCGAGGACACCCGGAGCAGATC
CTGTTTGTCGGATAGGAAAAGGACATTGACGATACAAGTATAGATAGAAAGCTTGCGTAC
TTTAAAGGGCGATGAAATTGGTTGTAAGGTGCATTGGTGTGTGAGTGGGGGTTAAAGCTG
CTCCGTTTTATTCTCCGAATAAAGATGACACCTTTCAGAGCGTCTTTCAAAAAAAAAAAA
AAAAA

Homology of Contig U35_19092 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g27590.1	471	0.0	protein\|OsSCP18 - Putative Serine Carboxypeptidase homologue, expressed
Brachypodium v1_2	Bradi1g60600.1	469	0.0
Arabidopsis v10	AT2G27920.1	461	3e-167	\| Symbols: SCPL51 \| serine carboxypeptidase-like 51 \| chr2:11885777-11889043 REVERSE LENGTH=461