barSeed - Barley Seed Development Database

Probe CUST_11793_PI390587928

Source Contig U35_19093

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11793_PI390587928	Hv_44K_v2	AAGCTTGCAGCCTTGCACCAACCTAAAGTACTGGAGAGATCTGTTTGATTCGACAAAAAA	2045	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52579.1	4028	9e-22	3894 - 3948	100	55 / 55	plus	ABC09357 ABC14714 ABC14715
JLOC1	JLOC1_33706.2	4645	5e-22	4009 - 4063	100	55 / 55	plus
JLOC1	JLOC1_33706.1	4464	5e-22	3828 - 3882	100	55 / 55	plus
Harvest35	U35_19093	2116	3e-25	2046 - 2105	100	60 / 60	plus

Contig Sequence (2116 bp)

>U35_19093 2116 Hv_44K_v2
GGCACTTGTCCGACACCTTGCAGCCTGTGAGACCATGGGCTCAGCAACCTCCATTTGCAG
CGACAAGACTGGCACACTCACAACGAATCACATGACTGTCGTCAAGGCTTGCATCTGTGG
CAAAATTAAAGAAGTGGATAAATCTTCAGACACCAAGAGCCTATTCTCTGAGCTACCTGA
TTCTGTCATGACAATGCTCTCGCAGTCCATCTTTAACAACACTGGTGGCGATGTTGTCAT
CAACCAGGGTGGCAAACGCGAAATACTGGGCACACCAACTGAGACAGCAATTCTAGAGCT
TGGCCTGTCACTCGGTGGTGATTTCCAGGCAGTGCGAAAAGCAACCACCCTCATCAAAGT
CGAGCCATTTAACTCAGCGAAGAAGAGAATGGGAGTGGTCATCCAGCTGCCAGGGGGTGC
ATTCCGTGCTCACTGCAAAGGTGCATCAGAGATCATATTGGCATCTTGCAGCAAGTACCT
GAATGATCAAGGCAATGCCGTCCCCCTTGATAGTGCAACTATGGCTCACTTGAATGCCAC
GATTGAGAGCTTTGCAAATGAGGCACTTCGCACTCTATGCCTTGCTTACATTGAAGTTGC
AGATGGGTTCTCAGCTAATGATGCGATTCCTGAAGAGGGGTACACATGCATTGGCATTGT
TGGGATCAAGGACCCAGTGCGCCCAGGTGTGAAGGAATCTGTCGCCATCTGCAGGTCAGC
CGGTATTACTGTCAGGATGGTCACGGGCGACAACATCAACACAGCAAAGGCAATTGCCCG
GGAATGTGGCATTTTGACTGAAGGTGGTCTTGCCATTGAAGGCCCAGATTTTAGAATTAA
AAGTGCAGAAGAAATGTACGAATTGATACCGAAGATACAGGTAATGGCTAGGTCTTCACC
ACTTGACAAGCACACCTTAGTGAAGAATCTCCGGACTACACATGAAGAAGTTGTTGCGGT
GACTGGTGACGGGACAAATGATGCACCCGCACTTCACGAGGCTGATATTGGACTTGCGAT
GGGCATTGCTGGAACTGAGGTTGCGAAAGAGAGTGCCGATGTCATCATTCTTGATGACAA
TTTCTCCACGATAGTCACAGTTGCCAAATGGGGTCGATCTGTGTACATCAACATTCAGAA
GTTTGTGCAGTTTCAACTGACAGTCAACGTGGTTGCCCTCGTTGTGAACTTCTCGTCAGC
TTGCTTGACAGGGAGTGCTCCCCTTACTGCTGTTCAGTTGCTCTGGGTCAATATGATCAT
GGACACACTAGGAGCATTGGCATTGGCCACAGAACCTCCAAACGACGAACTGATGAAGAG
GACTCCTGTTGGAAGGAAAGGAAACTTCATCAGCAACATTATGTGGAGGAACATTATGGG
ACAGGCAATCTACCAGTTCTTTGTAATTTGGTATCTGCAGACTGAAGGAAAGACACTGTT
TGCAATTAAGGGTGACAATTCCGATCTAGTCTTGAACACTCTCATCTTCAATTGCTTTGT
ATTCTGCCAGGTGTTCAACGAGGTGAGCTCCAGAGAGATGGAGAGGATAAATGTATTCAA
AGGCATTCTAAACAACAACGTGTTCGTCGCTGTGCTCGGCAGCACGGTCATATTCCAGAT
CATCATAGTACAGTTCCTTGGCGATTTCGCAAACACCACTCCTCTGTCACTCAAGGAGTG
GTTCTCCTGCATTGTCATCGGTTTCATAGGCATGCCTATCGCTGCGATAGTCAAGCTTAT
CCCGGTGGGTTCTCAGTAGGAGACGACAACTAATTTCCGGTCAGGAACTGAAGTCAGGTA
ATAGGACTAAGGGCTGATGACGCCAATGCAGTTCGGGCGCTGTTGTGAGCATAAGAAACT
GTTCTTTCTGCTATTAATCCGTTTTATCTAGGTGAATCTATGGCCTTCTTTTTTCTTTTG
CATTTGATCTTTAGAGGACGAGCCAAGACTGTGGGCTTGATTCTTCAGAAGTGTTTGATA
GACCCCTTGTAGTTTCTTTTTTCATGTTATTTTCCTTGGAGTGTTGAAACTTGAAATTGT
ATGATAAGCTTGCAGCCTTGCACCAACCTAAAGTACTGGAGAGATCTGTTTGATTCGACA
AAAAAAAAAAAAAAAA

Homology of Contig U35_19093 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g10640.1	1020	protein\|calcium-transporting ATPase, plasma membrane-type, putative, expressed
Brachypodium v1_2	Bradi1g70920.1	1021
Arabidopsis v10	AT4G37640.1	1014	\| Symbols: ACA2 \| calcium ATPase 2 \| chr4:17683225-17686808 REVERSE LENGTH=1014