barSeed - Barley Seed Development Database

Probe CUST_11790_PI390587928

Source Contig U35_19095

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11790_PI390587928	Hv_44K_v2	TTCGGCATGTTGTAAATTGCAACGAAGATCATAGTTAAAGGAAATTGCACATTGGTGACT	1556	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354074	4533	2e-24	4474 - 4533	100	60 / 60	plus	ABC13685
MLOC	MLOC_37560.4	3371	2e-24	3264 - 3323	100	60 / 60	plus	ABC13685
MLOC	MLOC_37560.2	4055	2e-24	3924 - 3983	100	60 / 60	plus	ABC13685
MLOC	MLOC_37560.5	3118	7e-23	3062 - 3118	100	57 / 57	plus	ABC13685
JLOC1	JLOC1_24326.2	4080	8e-25	3880 - 3939	100	60 / 60	plus
JLOC1	JLOC1_24326.1	4095	8e-25	3895 - 3954	100	60 / 60	plus
Harvest21	ABC13685	1687	3e-25	1557 - 1616	100	60 / 60	plus	ABC13685
Harvest35	U35_19095	1687	3e-25	1557 - 1616	100	60 / 60	plus

Contig Sequence (1687 bp)

>U35_19095 1687 Hv_44K_v2
TTGGGATTCTCCAGTGGTAGGGCTATTGCAGCTTGCGTTATATACAGGTGCCTTCTGCAC
TGGAGATCATTTGAAGTTGAAAGAACTGGTGTGTTTGACCGTATTATTCAAACAATAGGC
TCTGCTATAGAGGTCCAGGACAATAACGACAAGTTAGCGTATTGGCTCTCCAATTCATCC
ACATTACTCCTACTTCTACAACGGACACTGAAAACAAGTGGAGCAGCTGGACTCACTCCT
CAGAGGCGAAGGTCAACTGCTGCATCGTTTGGGAGGGTTTTTTCGGGAATTCGAGCTTCT
CCACAAAGTGCTGCACGACCTTTTCTTGGTAGCCGCTTGATTGGAGGACTAGGTGATCTT
CGTCAAGTGGAAGCTAAGTATCCTGCTCTGCTTTTCAAGCAACAGCTTACAGCTTTCCTC
GAGAAGATATATGGAATGATTAGAGACAATCTGAAGAAAGAGATATCTCCATTGCTTGGT
CTTTGCATCCAGGCACCAAGAACTTCTCGTGCAAGTTTGATAAAAGGATCTCGTTCTCAA
GCAAATGCCTTGGCCCAACAAACTCTGATCGCACATTGGCAGAGTATTGTGAAAATATTA
ACAAACTACCTGAATGTTTTGAAAGCCAATTATGTCCCTTCATTCTTAATCAGCAAGGTG
TTCACTCAGATATTTTCGTTTATTAATGTCCAGCTGTTCAATAGTCTGCTTCTCCGGCGT
GAGTGCTGTTCATTTAGCAACGGAGAATATGTCAAAGCTGGATTGGCTGAGTTAGAGCAG
TGGTGCATTTATGCCACTGAAGAGTATGCAGGTTCTTCCTGGGAAGAGTTGAAGCATATT
AGGCAGGCCGTTGGATTCCTTGTAATTCATCAAAAGCCAAAGAAAACATTGAAAGAAATC
ACCAACGATTTGTGCCCTGTCCTTAGCATACAACAGCTATATCGAATCAGTACAATGTAT
TGGGATGACAAATATGGCACCCACACTGTTTCGTCAGAGGTCATCTCAAGTATGAGAATA
ATGATGACAGAAGACTCGAACAATGCAGTGAGCAGTTCTTTCTTGTTGGATGACGATTCA
AGCATTCCATTTTCGGTGGACGACATATCAAAGTCAATGACAGAAATCGAGGTAACAGAC
GTTGATATGCCACCTTTGATCCGGGAGAATTCTGGATTTACCTTCCTACACCAAAGAAAG
GACTAAGCGTGCAGTCCTTCAGCTTGCGTCTTTTACATTCCTTTCCCCACTCGATCTGTG
CACAAATCATGTATATACTCATGGCTTTTACTTCTACCAAATCAAATCTAGTCTGGTCAA
GTTATTTGGTAGATCTGTTTCATATTTTTTGTTAGGTCCTCGGTTTGATTGATTGGTTAT
GTCTTCAGTTTGGCTCCCCTTTTTGTTGGGAGGTCAAATTTTATATTTGCAATGCCAGGG
GTCGGATGCCTTTGGTTAGGATGCCGAGCTGCTATTGGAAAAGTTCGTCGTCTGTTTAGC
TTCTGGAAAGGTTTTCCACGGCTACTAGTCAGTCATTTGGGTCGTTCATTTCAATCTTCG
GCATGTTGTAAATTGCAACGAAGATCATAGTTAAAGGAAATTGCACATTGGTGACTAAAA
AAAAAAAAAAAAAAAAGAATCTAGATGTTTATCATCTGTTTTTACATCAAAATCATACGT
CTGTCGC

Homology of Contig U35_19095 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g48140.1	1558	protein\|myosin, putative, expressed
Brachypodium v1_2	Bradi2g41977.1	1530
Arabidopsis v10	AT5G20490.1	1545	\| Symbols: XIK, ATXIK, XI-17 \| Myosin family protein with Dil domain \| chr5:6927064-6936825 REVERSE LENGTH=1545