barSeed - Barley Seed Development Database

Probe CUST_1177_PI390587928

Source Contig U35_33100

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1177_PI390587928	Hv_44K_v2	GGTTAGAAAGATTAGGCGGATGCATGTGAGTTGGAAGTTTGGGTGGACATATATCCAGTA	378	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12824.3	2216	2e-24	271 - 330	100	60 / 60	minus	ABC08988
JLOC1	JLOC1_8623.1	2175	8e-25	257 - 316	100	60 / 60	minus
Harvest35	U35_33100	447	3e-25	379 - 438	100	60 / 60	plus

Contig Sequence (447 bp)

>U35_33100 447 Hv_44K_v2
TGGAGATCCAGGCCCAGCATCCATGTGGGGAGACACTGAAGAGAGTATTTGAGTTCATTA
ATGATGAGAAGGCATCTGCTTTGGAATCCAAGATCAAGAAGCAAAGAGTATCTGAGTTGA
GGATGGAGATGCGCCGAGCTGACACAAAAAAGGAGGTGACCAACATATTTATAGGATTGC
TGAACTAAGCCCTTCTGTTGTTGTCAACCCATTTATGCGGTATGCCATTCTACTTATGCC
TGTGTTATTATGTTTTATCGTGATGATATAATGAAGATTCTCATATAACTCAATGTGAAA
CATCCTACTTCTCTAGTAGCCTAGTTTACTTCAAGTCTAGCTTTATACATCTGCAACCAA
TTTCCAACCACCCTAAATGGTTAGAAAGATTAGGCGGATGCATGTGAGTTGGAAGTTTGG
GTGGACATATATCCAGTATAANTCTGT

Homology of Contig U35_33100 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None