barSeed - Barley Seed Development Database

Probe CUST_11763_PI390587928

Source Contig U35_45386

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11763_PI390587928	Hv_44K_v2	TCCACTTACGACACGGACGGAAGGTTCATGCCGGTAAATTTCGAGAGCATCTTCAGCAAG	122	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57234.2	601	7e-23	245 - 304	98	59 / 60	minus	ABC49624
MLOC	MLOC_57234.1	929	7e-23	229 - 288	98	59 / 60	minus	ABC49624
JLOC1	JLOC1_37056.1	1128	4e-23	642 - 701	98	59 / 60	plus
Harvest21	ABC44214	191	3e-25	123 - 182	100	60 / 60	plus
Harvest35	U35_45386	191	3e-25	123 - 182	100	60 / 60	plus

Contig Sequence (191 bp)

>U35_45386 191 Hv_44K_v2
TTATAGCGGCAATTGGCATAGGTATCGGACTGAGCTTCCCAACTCTACCTAACTGGATAC
CATCTCCCTTGTTCCCCATACACATCAAGAACATCCACAGGGATAAGCATGGCAGCGACT
CCTCCACTTACGACACGGACGGAAGGTTCATGCCGGTAAATTTCGAGAGCATCTTCAGCA
AGTATGCCCGC

Homology of Contig U35_45386 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None