barSeed - Barley Seed Development Database

Probe CUST_11757_PI390587928

Source Contig U35_45394

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11757_PI390587928	Hv_44K_v2	GTTTGCTTGATAGTTTATATGATCATTGCAGTCATTCATGCCTCATAAGGTTGAAATTGC	584	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_43486.3	1947	2e-24	332 - 391	100	60 / 60	plus	ABC06616
Harvest21	ABC44224	648	3e-25	585 - 644	100	60 / 60	plus
Harvest35	U35_45394	648	3e-25	585 - 644	100	60 / 60	plus

Contig Sequence (648 bp)

>U35_45394 648 Hv_44K_v2
AACAAGGTCTGCCTCAAGGGCGGCCTCGCCACCCCCGTCGGCGGGGGCGTCTCCTCCCTC
AACATGCAGCTCCGCAAGGAGCTCGACCTCTTCGCCTCCCTCGTCAACTGCGCCAACGTC
CCCGGCCTGCCCACCAGGCACAAGAACGTCGACATCGTCGTCATCAGGGAGAACACCGAG
GGCGAGTACTCGGGCCTCGAGCACGAGGTCGTCCCGGGGGTCGTCGAGAGCCTCAAGGTA
TGCCTGATCGTTCGCTCCCTGTTGTTTGTTTGGAAAATTCACCTCCAGTCCTTCACCTGT
TCATTGGTTGACGTCTGGTGTGCCCTTTTTTTTTGTCGTTGGCTCTATTGCTGGTACATG
GTATATGATCGGTGGATTTGGCATATCATAGTTAGTTAGTATACATGGTCAAGAGGAAGG
TTTTCCGTTGCAAAGTTGCCACTGTCAGAGTAGATATATGATTTGTCTGTCATGAACTGA
TGCTGTCAGCCGGTTATCTACCACGATCCGTGTAAAACTGAGTTATCTGAATTTGTGACC
AGGATGATGTAGATTACTAAGATGCTGTTAGAAATGAATGTACTGTTTGCTTGATAGTTT
ATATGATCATTGCAGTCATTCATGCCTCATAAGGTTGAAATTGCTGGT

Homology of Contig U35_45394 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None