barSeed - Barley Seed Development Database

Probe CUST_11755_PI390587928

Source Contig U35_4300

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11755_PI390587928	Hv_44K_v2	CGTTGTGTGTTGTAGTATCATTCGGAAGGGAATAAAGTGTTGCAGTATTTCATCTAAAAA	703	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.573	2.954	1.140	0.794	0.267	0.178
Raw	294.575	249.475	90.041	105.157	11.196	8.363

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39585.1	1026	7e-23	875 - 931	100	57 / 57	plus	ABC09382
JLOC1	JLOC1_25819.1	1046	4e-23	776 - 832	100	57 / 57	plus
Harvest21	ABC09382	775	3e-25	704 - 763	100	60 / 60	plus	ABC09382
Harvest35	U35_4300	775	3e-25	704 - 763	100	60 / 60	plus

Contig Sequence (775 bp)

>U35_4300 775 Hv_44K_v2
GTTCTGTGGAACGGACGAAGCAAACCAGCAACACCGAGCGATGATGTCATCAACTACCGC
TCGCGTCCTCGCGGCCGTTCTCGCCGCCGTGGTCTGCGTCGGCGCGACCCCGGAGACGAC
GTGCAGGGCGGCGGCGGGCGCCGACCGGCGCGTGGACTACCGCTTCTGCGTGTCCAGGCT
GAGCCAGCACCACGACAGCCCCGACGCCGACACGTGGGGGCTGGCCAAGGTGGCCGCCGA
CGTGGGCGTCCTCATGGCCGGCAACGGCGCCTACGACATCAAGGCCATGCTCTCCGGCAA
CAAGGCGGCGCGCGGGCCGCTGGAGCAGTGCGAGGCGCTGTACGACAGGATGGGCTCCGC
GTTCGCCGAGGCGTACGACGGCATCGACAGGCGCGACTACGCGACCGGCAAGGCCAAGGC
CGGCGAGGCCGCGTCCCTCGCGCGCCGCTGCGGCGACGCCTTCGCCCGGGCCGGCGCCGC
CGTCCCGTCGCGGCTGGCGAAGCAGGGCGCCGACTCGGTGCAGATGGCCATCGTCTGCAC
CGCCGTCACCAGCCTCATCAAGTGATCTGATCTCTCTGCATTGCATTGTTTTTTGTTTGT
CCGTCGGGTGAAAAGAAAATCGTGGTGCCTGCACTGCATTGTTGGTTGCTCGACGCCCGG
GAGTCCGTCATGTCATGCACGCCTGTGACTGTGTTCGTGTCTCCGTTGTGTGTTGTAGTA
TCATTCGGAAGGGAATAAAGTGTTGCAGTATTTCATCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4300 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g33380.1	184	1e-69	protein\|pectinesterase inhibitor domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g45080.1	187	4e-79
Arabidopsis v10	None