- Probe CUST_11754_PI390587928
- Source Contig U35_4301
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11754_PI390587928 | Hv_44K_v2 | ATGTGATGTGTAGATACGCTCGTTCCGAAGGAATCCATAACTGTTGACGAGTTCCATTGC | 425 | GeneList: tan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.528 | 0.748 | 1.400 | 1.633 | 0.986 | 0.921 |
| Raw | 1048.563 | 2367.079 | 3839.320 | 6594.300 | 1524.183 | 1526.183 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_19030.1 | 777 | 7e-23 | 708 - 767 | 98 | 59 / 60 | plus | ABC10096 |
| JLOC1 | JLOC1_13188.1 | 848 | 4e-23 | 663 - 722 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC10096 | 496 | 6e-22 | 426 - 479 | 100 | 54 / 54 | plus | ABC10096 |
| Harvest35 | U35_4301 | 532 | 3e-25 | 426 - 485 | 100 | 60 / 60 | plus |
Contig Sequence (532 bp)
>U35_4301 532 Hv_44K_v2 CTCGGGTGCAGCGCGACGCCGCTCGAGGGGATACCGGAGGAGGGGCCGTGCGGGTGCCAG TGCGGGGCATGCGGGGACGACGACTGGGAGATGGTCGGAGACAGCAGCGACGATGACGCC GACGCCGACGCCGGCCACGGGTTGAAGGAGGAGGAGGAGGTGGACGCGGATTCGATGCGG TGGGCGCTCGAGATGGGCGCCTGGGCGGTGTGCGTCGGGGTCGGCCTGCTCGCCACCGCC CGGCGGTTTAGCCGGAGCCGGAGGAGGGCCGCGCTCCGGTGATCCCTTCCCGCCCGCCGA AAAGGGAGGAATTTGTTTAGCTTACTGTTCTTTTCACCGAGTCAACCAACCAAAAGTGTA TATATTCACCGGATTTTGCACTAGTTTATTTCTCTAGCGATTTTGTCAAGCTTTCTGTGT ATGTAATGTGATGTGTAGATACGCTCGTTCCGAAGGAATCCATAACTGTTGACGAGTTCC ATTGCCGGATCATCTTCATGAAAACCATTCTTAGCAAAAAAAAAAAAAAAAA
Homology of Contig U35_4301 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |