barSeed - Barley Seed Development Database

Probe CUST_11753_PI390587928

Source Contig U35_4302

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11753_PI390587928	Hv_44K_v2	AGTTATTGACAAAGATACAAATGGGCGCTGGTGTTCGAGCACTGGATTTTCTCCAAAAAA	1268	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.723	1.885	2.685	1.207	0.243	0.167
Raw	5521.992	21919.137	26922.633	18983.087	1390.775	1015.841

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12809.2	1674	3e-21	1596 - 1649	100	54 / 54	plus	None
MLOC	MLOC_12809.1	2074	3e-21	1657 - 1710	100	54 / 54	plus	None
JLOC1	JLOC1_8606.1	1934	2e-21	1509 - 1562	100	54 / 54	plus
Harvest35	U35_4302	1339	3e-25	1269 - 1328	100	60 / 60	plus

Contig Sequence (1339 bp)

>U35_4302 1339 Hv_44K_v2
AGCTAGCCACGCCTTCCGATCCAGCAGCGAACAGCGCACAGGCTGCCGCCGCATCCAACG
TTTGATCAGCGTGCCCATATATACGTGCGCGCGCGCGGCGGGCTCGTGCGTGGCCAGAGC
ACCGCCTCGCCAGCGGAGCTCGCTCGAGTACTTAACACTTCACTCTCCCTGCAGCGGAGG
ATCTTCCCTTCCTCTTCTTCAGCTGTTGCTTTCTGGAAGTGCCGCGAGGTGATGGGGATG
CTCCTGGCGCGCGTAGCCGTGTCTGTTCTCGCCGTGGCGACGGCCGTTGTTGTCGTCGTC
GATGGCCAGATGTCGCCGGCGTTCTACGACGCCACGTGCCCGGGGCTGCAGTCCGTCGTG
CGCCGCGGCATGGCGCAGGCCGTGCAGAAGGAGGCGCGCATGGGCGCGTCCATCCTCCGC
CTCTTCTTCCACGACTGCTTCGTCAATGGGTGCGACGCCTCCGTCTTGCTGGACGACACG
GCCAACTTCACGGGGGAGAAGAACGCGGGGCCGAACGCCAACTCGCTGCGCGGCTACGAG
GTCATCGATGCCATCAAGGCGCAGGTCGAGGCTTCCTGCAAGGCCACCGTCTCCTGCGCC
GACATCGTCGCGCTCGCCGCCCGCGACGCCGTCAGCCTGCTCGGGGGGCCGAGCTGGACG
GTGCAGCTGGGCCGGCGAGACGGGCGCTCGGCGAACCAGAACGCGGCGAACACCAACCTG
CCGCCGCCGGATGCGAGGCTCGCCGACCTCCTCACCAGGTTCAGCGACAAGGGCCTGGAC
GCGCGCGACCTGACCGCGCTGTCCGGGGCGCACACCGTGGGCTGGGCACGGTGCACCACC
TTCCGCGCGCACATCTACAACGACACCGGTAACGCGGCCGTGGACGCCGCCTTCGCCACG
CAGATACGCGCCAAGGCCTGCCCTTCCGCCGGCGGTGACGGAAACCTCGCGCCGCTCGAG
CTGCGCGCCCCCTCCGCATTCGACAACGGCTACTTCCAGGACCTCGTCGCTCGCCGCGTG
CTCCTGCGGTCCGACCAGGAGCTCTACGGGAGCGGCGCGGGCAACGGCAGCACGGACGCG
ATCGTGCGAGCATACGCCGCCAACGCCACGCTCTTCGCGGTAGACTTCGCCGCCGCCATG
GTGAGGATGGGCAACCTGGCGCTCACCGGGAAGAACGGCGAAGTCCGGCTAAACTGCCGG
CGAGTGAACTGAGCTGAATGAGTAGAATCAGTGAATGGATTCCTGATGTATGCATCGCAA
AGGCATAAAGTTATTGACAAAGATACAAATGGGCGCTGGTGTTCGAGCACTGGATTTTCT
CCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4302 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g10850.1	328	3e-169	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi2g06497.1	328	1e-166
Arabidopsis v10	AT5G05340.1	324	1e-107	Peroxidase superfamily protein \| chr5:1579142-1580819 REVERSE LENGTH=324