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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_11750_PI390587928Hv_44K_v2TGCTGGCTTTATGCAATCATCAGGCGAAAAATAGGAATAGAGATTGAGGGAGAATGCCAA815GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.2351.8221.1351.0540.3790.404
Raw 129.096169.58689.248126.22316.46019.182



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_40338.110724e-23924 - 9839859 / 60plus
Harvest35U35_43058903e-25816 - 87510060 / 60plus



Contig Sequence (890 bp)

>U35_4305 890 Hv_44K_v2
CTCTGCCCTCTCCGACGATGCTGCTGATGAGGTCCGCCGCCGCCCCCTGCTCCTTCACCT
CCATGCTCCTCCGCCGCCTCACCACCTCCTCCTCCGCTTCATACGCCATCCGCCGTCAGG
CCACCCTGGCCCTCTCTTCCCTATCCTCCTCCCCCTCCTCGTCGTCTGCTAGATTCACCA
CCTGGTCCCCTCCCCCTCTTCCCGGCAGCGCCCGGACCGGGGGCTTCTCGGCCTGGGCGT
CGGCGCCGGGACCGGCGGGACCCACCGGCTCCGCCATCGCGCAGTCTCTGGAGACCAAGA
TCAAGGAGCAGCTGGAGGCGGACCATGTCACCGTCGTCGATGCCTCAGGGGATGGCCGCC
ACGTCTGCATAGACGTGGTTTCGAAGGCGTTTGAGGGGAAATCCGCTGTGAACAGGCAGA
GAATGGTTTACAAGGTTATATGGGAGGAGCTTCAGAGCACCGTGCATGCTGTGGACCAAA
TGACCACCAAGACGCCCGGTGAGGCGGCTGGCAACTAGTAATCCAGATCTGCATGGGAAA
AGTTCAATTTGGAACGCTGATAAACTGTTGTACACCAAGACCCGGCCACGGCCAGGATCG
ACATGAAGACATTCTTTTGTAGGCTACACTTTTCATGTAAACGTCAACTGATGGATCAAT
AATTTGGGGTATGATTGGCATTGCTTCCGTAAGAAATATATTTTTGGCTACAATTAGCAT
TTTGTTTCATGGGTCCAGAAGATTTCAGAGTTAGAACCTTGGGTTTGATTTTTATATGTT
TTTTCATGTGACTGATCTACCCTGAGGTGTATCGTTGCTGGCTTTATGCAATCATCAGGC
GAAAAATAGGAATAGAGATTGAGGGAGAATGCCAAAAAAAAAAAAAAAAA



Homology of Contig U35_4305 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2Bradi1g42030.11663e-53
Arabidopsis v10None