barSeed - Barley Seed Development Database

Probe CUST_11748_PI390587928

Source Contig U35_4307

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11748_PI390587928	Hv_44K_v2	TTTTGGAACGGAGGGAGTAGTAATTATTGAAGGAGTAATGAGGATCAGAAGGTTTGTTAA	1145	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.481	2.086	0.497	0.414	0.918	1.197
Raw	35.641	47.600	9.526	12.693	10.158	14.670

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_8891.2	1644	6e-21	1283 - 1342	97	58 / 60	plus
Harvest35	U35_4307	1220	3e-25	1146 - 1205	100	60 / 60	plus

Contig Sequence (1220 bp)

>U35_4307 1220 Hv_44K_v2
ATTCGGCCAAGTGGCCGCTTGCTCATCTCAAGATAAGCCTTCAAGTCCTCCTCCTCTTGC
CAAAACGCGGCAATCCGTGAAGCTCTTCTACCACATCTTCTTGCCATCTCCAACTGCAGC
AAGCAATCCAAGAAATTCAGAGGAAGAAGAAGAGCGATCGAGCAAACTAGGAGGAGGCCA
AGAGCTAGCGGCGGCCATGGCGTTAGCACCCGCATCGCTCCAGAGCTTCCTCACGGGGAG
GCCCCTCTGCACGGCCCCGCAGGTCGCGAGGTCGTCAAGGCCGGCATCAGCTAGGCTCTC
GTGCAGGGCCTCAAACGTCGACAAGGACGGCGCGCCCCCGGCGTGGGCCGCAAACCTCGA
GATGAAGAATCTTGGGAAGCTGGCGATGGTCGCGCTGGCCGCCGGCGTGCTCGTGCTCGC
GCCCGTCGACGACGCCATGGCCGGCAAGTCGGGCGGCAGGATCGGCGGCAAGGCGTTCCG
TTCCGCGGCGCCGCGCCCGTCCGGTCCACGGATAAACAACTCGAGGACGAACATCTACGT
CAATCCCGGCGTGGCGCCGCCGCTGGTCGGCGGCTACGGGTACGGTGGCTACGGCGGGTA
CGGCTTGTCGCCGTTCGGCTTCTACGGTGGCCCGAGCGTCGCCCTCGGGGTCGGTGGTGG
CTTCGACACGCTCGTCCTATTCATAGTGGGCGGGGCGGTCGTCGGCGCCGTCCGGCGGTT
CCTCAACCGCAGGGATAACGATGATTACGACGACTAAATGCTGCAAGTCATGTAATCTCA
TCTTACCCTTGTACTCTATAAATATAAGTCTTTTAGGAGATTTTACTAGTAGTCTACATC
CGAAGTAAAATGAATAAATCTACACTTTAAAATATGTCTATATAGATTCGTATATAGTCT
ACTAGTAGAATCTCTACAAAGACTTATACTATTTAGAAACGGAGGGAGTAATGTAGAAAG
ATTGCTATTTTTCTCTTCCCAATAGTAATTTTAAAGTGACATACTCCTTTCGTTTCTAAA
TATAAGACCTTTTAGAGATTGCACTATGAACTACATACGGATGTACATAGACATATTTTA
GATTATAGATTCACTTATTTTGTTTTGTATGTAGTCTTCTAGTGAAATCTCTAAAAGGTC
TTATATTTTGGAACGGAGGGAGTAGTAATTATTGAAGGAGTAATGAGGATCAGAAGGTTT
GTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4307 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None